BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg931290 Length=1802 Score E Sequences producing significant alignments: (Bits) Value AT2G15620.1 | Symbols: NIR1, NIR, ATHNIR | nitrite reductase 1 ... 2852 0.0 > AT2G15620.1 | Symbols: NIR1, NIR, ATHNIR | nitrite reductase 1 | chr2:6810476-6812939 FORWARD LENGTH=2110 Length=2110 Score = 2852 bits (1544), Expect = 0.0 Identities = 1704/1782 (96%), Gaps = 8/1782 (0%) Strand=Plus/Plus Query 24 catgacttctttctctctcactttcacatctcctctccttcctt-ct--tcctccAAACC 80 ||||||||||||||||||||||||||||||||||||||| |||| || ||| ||||||| Sbjct 76 CATGACTTCTTTCTCTCTCACTTTCACATCTCCTCTCCTCCCTTCCTCCTCCACCAAACC 135 Query 81 CAAAAGATCCATCCTTGTCGCCGCCGCTCAGACCACAGCTCCGGCAGAATCCACCGCCTC 140 |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 136 CAAAAGATCCGTCCTTGTCGCCGCCGCTCAGACCACAGCTCCGGCCGAATCCACCGCCTC 195 Query 141 TGTTGACGCAGATCGTCTTGAGCCAAGAGTTGAATTGAAAGATGGGTTTTTTATTCTCAA 200 |||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct 196 TGTTGACGCAGATCGTCTCGAGCCAAGAGTTGAGTTGAAAGATGGTTTTTTTATTCTCAA 255 Query 201 GGAGAAGTTTCGAAAAGGGATCAATCCTCAGGAGAAGGTTAAGATTGAGAAAGAGCCAAT 260 ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| || Sbjct 256 GGAGAAGTTTCGAAAAGGGATCAATCCTCAGGAGAAGGTTAAGATCGAGAGAGAGCCCAT 315 Query 261 GAAGTTGTTTATGGAGAATGGTATTGAAGAACTTGCTAAGAAATCTATGGAAGAGATTGA 320 |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 316 GAAGTTGTTTATGGAGAATGGTATTGAAGAGCTTGCTAAGAAATCTATGGAAGAGCTTGA 375 Query 321 TAGTGAAAAGTCTTCTAAAGATGATATTGATGTTAGACTCAAGTGGCTTGGTCTCTTTCA 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 376 TAGTGAAAAGTCTTCTAAAGATGATATTGATGTTAGACTCAAGTGGCTTGGTCTCTTTCA 435 Query 381 CCGTAGAAAGCATCATTATGGGAAGTTTATGATGAGGTTGAAGTTACCAAATGGTGTGAC 440 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 436 CCGTAGAAAGCATCAGTATGGGAAGTTTATGATGAGGTTGAAGTTACCAAATGGTGTGAC 495 Query 441 TACAAGTGCACAGACTCGGTATTTAGCGAGTGTGATTAGAAAGTATGGTGAAGATGGATG 500 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 496 TACAAGTGCACAGACTCGGTATTTAGCGAGTGTGATTAGGAAGTATGGTGAAGATGGGTG 555 Query 501 TGCTGATGTGACTACTAGACAGAATTGGCAGATCCGTGGTGTTGTGTTGCCTGATGTGCC 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 556 TGCTGATGTGACTACTAGACAGAATTGGCAGATCCGTGGTGTTGTGTTGCCTGATGTGCC 615 Query 561 TGAGATCTTGAAAGGTCTTGCTTCTGTTGGGTTAACGAGT-TTGCAGAGTGGTATGGATA 619 |||||||||||||||||||||||||||||| ||||||||| || || ||||||||||||| Sbjct 616 TGAGATCTTGAAAGGTCTTGCTTCTGTTGGTTTAACGAGTCTT-CAAAGTGGTATGGATA 674 Query 620 ACGTGAGGAATCCGGTTGGGAATCCTATAGCTGGGATTGATCCGGAGGAGATTGTTGACA 679 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 675 ACGTGAGGAACCCGGTTGGGAATCCTATAGCTGGGATTGATCCGGAGGAGATTGTTGACA 734 Query 680 CGAGGCCTTACACGAATCTTCTTTCGCAGTTTATTACTGCTAATTCAGTAGGAAACCCCG 739 ||||||||||||||||||| |||||||||||||| || ||||||||| ||||||||||| Sbjct 735 CGAGGCCTTACACGAATCTCCTTTCGCAGTTTATCACCGCTAATTCACAAGGAAACCCCG 794 Query 740 ATTTCACCAACTTGCCAAGGAAGTGGAATGTGTGTGTGGTGGGGACTCATGATCTCTATG 799 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 795 ATTTCACCAACTTGCCAAGAAAGTGGAATGTGTGTGTGGTGGGGACTCATGATCTCTATG 854 Query 800 AGCATCCACATATTAATGATTTGGCCTACATGCCTGCTAATAAAGATGGACGGTTTGGAT 859 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 855 AGCATCCACATATCAATGATTTGGCCTACATGCCTGCTAATAAAGATGGACGGTTTGGAT 914 Query 860 TCAATTTGCTTGTGGGAGGATTCTTTAGTCCCAAAAGATGTGAAGAGGCCATTCCTCTTG 919 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 915 TCAATTTGCTTGTGGGAGGATTCTTTAGTCCCAAAAGATGTGAAGAAGCGATTCCTCTTG 974 Query 920 ATGCTTGGGTCCCTGCTGATGAAGTTCTTCCACTTTGCAAAGCTGTTCTAGAGGCCTACA 979 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||| Sbjct 975 ATGCTTGGGTCCCTGCTGATGACGTTCTTCCACTCTGCAAAGCTGTTCTAGAGGCTTACA 1034 Query 980 GAGATCTTGGAACTCGAGGAAACAGACAGAAGACAAGAATGATGTGGCTTATTGACGAAC 1039 ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 1035 GAGATCTTGGAACTCGAGGAAACCGACAGAAGACAAGAATGATGTGGCTTATCGACGAAC 1094 Query 1040 TTGGCGTTGAAGGATTTAGAGCTGAGGTAGAGAAGAGAATGCCAAATGGGAAACTCGAGA 1099 |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1095 TTGGTGTTGAAGGATTTAGAACTGAGGTAGAGAAGAGAATGCCAAATGGGAAACTCGAGA 1154 Query 1100 GAGGATCTTCAGAGGATCTTGTGAACAAACAATGGGAGAGGAGAGACTATTTCGGAGTCC 1159 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1155 GAGGATCTTCAGAGGATCTTGTGAACAAACAGTGGGAGAGGAGAGACTATTTCGGAGTCA 1214 Query 1160 ACCCTCAGAAGCAAGAAGGTCTTAGCTTCGTGGGCCTTCATGTTCCGGTTGGAAGGCTAC 1219 |||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||| Sbjct 1215 ACCCTCAGAAACAAGAAGGTCTTAGCTTCGTGGGGCTTCACGTTCCGGTTGGTAGGCTAC 1274 Query 1220 AAGCTGATGACATGGACGAGCTTGCTCGGTTAGCTGACACCTATGGCTCAGGTGAGCTAA 1279 |||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||||| Sbjct 1275 AAGCTGATGACATGGATGAGCTTGCTCGGTTAGCTGATACCTACGGGTCAGGTGAGCTAA 1334 Query 1280 GACTCACGGTAGAGCAAAACATCATCATCCCAAATGTAGAAACCTCGAAAACCGAAGCTT 1339 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1335 GACTCACAGTAGAGCAAAACATCATCATCCCAAATGTAGAAACCTCGAAAACCGAAGCTT 1394 Query 1340 TGCTTCAAGAGCCATTTCTCAAGAACCGTTTCTCCCCTGAACCATCTATCCTGATGAAAG 1399 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1395 TGCTTCAAGAGCCGTTTCTCAAGAACCGTTTCTCCCCTGAACCATCTATCCTAATGAAAG 1454 Query 1400 GCTTAGTTGCTTGTACTGGTAACCAGTTTTGCGGGCAAGCAATAATCGAGACCAAACTCA 1459 |||||||||||||||| |||| |||||| ||||| ||||| ||||||||||| || || | Sbjct 1455 GCTTAGTTGCTTGTACCGGTAGCCAGTTCTGCGGACAAGCGATAATCGAGACTAAGCTAA 1514 Query 1460 GAGCTTTAAAAGTTACGGAAGAAGTGGAGAGACTTGTATCTGTGCCAAGACCGATAAGAA 1519 ||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| | Sbjct 1515 GAGCTTTAAAAGTGACAGAAGAAGTAGAGAGACTTGTATCTGTGCCAAGACCGATAAGGA 1574 Query 1520 TGCATTGGACAGGATGTCCCAACACTTGCGGACAAGTCCAAGTCGCAGATATCGGGTTCA 1579 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 1575 TGCATTGGACAGGATGTCCCAACACTTGCGGACAAGTCCAAGTAGCAGATATCGGATTCA 1634 Query 1580 TGGGATGCTTAACACGTGGCGAG-AACGGAAAGCCTGTCGAGGGTGCTGACGTGTACGTC 1638 |||||||||||||||| |||||| || |||||||| |||||||||||||||||||||||| Sbjct 1635 TGGGATGCTTAACACGAGGCGAGGAA-GGAAAGCCAGTCGAGGGTGCTGACGTGTACGTC 1693 Query 1639 GGTGGACGAATAGGAAGTGACTCGCATATCGGAGAGATCTACAAGAAAGGTGTTCGTGTG 1698 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1694 GGGGGACGAATAGGAAGTGACTCGCATATCGGAGAGATCTATAAGAAAGGTGTTCGTGTC 1753 Query 1699 ACGGATTTGGTTCCATTGGTGGCTGAGATTCTAATCAAAGAATTTGGTGCTGTGCCTaga 1758 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1754 ACGGAGTTGGTTCCATTGGTGGCTGAGATTCTGATCAAAGAATTTGGTGCTGTGCCTAGA 1813 Query 1759 gagagagaagagaATGAAGATTGATTCAAA-GCTTTTGGATT 1799 || ||||||||||||||||||||||||||| ||| ||||||| Sbjct 1814 GAAAGAGAAGAGAATGAAGATTGATTCAAAAGCTATTGGATT 1855 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89156167920 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5