BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931351
Length=472
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20260.1 | Symbols: PSAE-2 | photosystem I subunit E-2 | chr... 647 0.0
> AT2G20260.1 | Symbols: PSAE-2 | photosystem I subunit E-2 | chr2:8736734-8737767
FORWARD LENGTH=607
Length=607
Score = 647 bits (350), Expect = 0.0
Identities = 433/473 (92%), Gaps = 6/473 (1%)
Strand=Plus/Plus
Query 4 CCAACAATCACAAACAGATGGCGATGACGTCAGCAGCTACCGGATTTATCCTGACGGCCA 63
||||| |||||| ||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 30 CCAACGATCACACACAAATGGCGATGACGTCAGCAGCTACCGGATTTATTCTCACGGCCA 89
Query 64 ACATCCCGGCCGCAGTAGGCGGCGGTTCTTCAAAGAGCGCCACCGTTGTGTCTTTCTTGC 123
|| ||||||| ||| ||||||| ||||||||||||||| ||||| |||||||||||||||
Sbjct 90 ACGTCCCGGCGGCAATAGGCGGTGGTTCTTCAAAGAGCACCACCATTGTGTCTTTCTTGC 149
Query 124 CGATGAGAAGCTTCGGTTCGAGGCTAGTAGTCAGAGCGGCGGAAGATGCATCTCCGGCTA 183
||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||| |
Sbjct 150 CGATGAGAAGCTTCGGTTCAAGGCTAGTAGTCAGAGCGGCGGAAGATACACCTCCGGCAA 209
Query 184 CTGCCTCATCGGAGGGTTCTTCCACCA---C--C-GCTGCTCCGGCGGAAGCTCCTGCCG 237
| ||||| ||||| |||||||||||| | | |||||||||||| ||| ||| ||||
Sbjct 210 CCGCCTCGTCGGATAGTTCTTCCACCACCGCTGCTGCTGCTCCGGCGAAAGTTCCGGCCG 269
Query 238 CGAAACCTAAACCTCCTCCGATTGGTCCAAAGAGAGGATCCAAGGTCAAGATTCTAAGGA 297
| || ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 270 CTAAGGCTAAACCTCCTCCAATTGGCCCAAAGAGAGGATCCAAGGTCAAGATTCTAAGGA 329
Query 298 AAGAATCCTACTGGTACAAGAACGTTGGATCAGTTGTGGCCGTTGATCAGGACCCGAAGA 357
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 AAGAATCATACTGGTACAAGAACGTTGGATCAGTTGTGGCCGTTGATCAGGACCCGAAGA 389
Query 358 CTCGATATCCGGTTGTGGTTCGGTTCTCGAAGGTGAATTACGCGAATATATCGACCAACA 417
| ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 390 CCCGATATCCGGTTGTGGTCCGGTTCGCCAAGGTGAATTACGCGAATATATCGACCAACA 449
Query 418 ACTACGCATTGGATGAGGTCGAAGAAGTAAAATGAGAGACATGGTTTATCTCT 470
||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 450 ACTACGCATTGGACGAGGTGGAAGAAGTAAAATGAGAGACATGGTTTATCTCT 502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22454663709
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5