BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931560
Length=1111
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17120.1 | Symbols: LYM2 | lysm domain GPI-anchored protein ... 1448 0.0
> AT2G17120.1 | Symbols: LYM2 | lysm domain GPI-anchored protein
2 precursor | chr2:7459047-7460819 FORWARD LENGTH=1333
Length=1333
Score = 1448 bits (784), Expect = 0.0
Identities = 1012/1116 (91%), Gaps = 40/1116 (4%)
Strand=Plus/Plus
Query 6 CCGGCAACCTAAAAAATGGAAACTTCCCGTTTTACccttctcggtcttctcgtctccttc 65
||||| |||| ||||||||||||||| ||||||||||||||||||| || |||||| ||
Sbjct 96 CCGGCGACCT-GAAAATGGAAACTTCCTGTTTTACCCTTCTCGGTCTCCTTGTCTCCCTC 154
Query 66 tccttcttcctcactctctccGCCCAAATGACCGGAAACTTCAAATGCAGCGGCTCAATC 125
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 155 TCCTTCTTCCTCACTCTCTCCGCCCAAATGACCGGAAACTTCAACTGCAGTGGCTCAACC 214
Query 126 TCCACGTGTCAATCTCTCGTTGGTTACTCAAGCAAGAACGCAACAACGTTGCGCAGTATC 185
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 215 TCGACGTGTCAATCTCTCGTTGGTTACTCAAGCAAGAACGCAACAACGTTGCGCAATATC 274
Query 186 CAAACCCTTTTCGCCGTCAAGAACCTCCGTTCGATCCTCGGAGCTAACAATCTCCCACTC 245
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 275 CAAACCCTTTTTGCCGTCAAGAACCTCCGCTCGATCCTCGGAGCTAACAATCTCCCACTC 334
Query 246 AACACCTCACGTGACCAACGCGTGAACCCGAATCAAGTCGTACGTATCCCAATCCATTGT 305
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 335 AACACCTCACGTGACCAACGCGTGAACCCGAATCAAGTCGTACGTGTCCCAATCCATTGC 394
Query 306 TCTTGCTCCAACGGAACCGGTGTCTCGAACCGGGACATCGAATACACCATCAAGAAAGAC 365
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 TCTTGCTCCAATGGAACCGGTGTCTCGAACCGGGACATCGAATACACCATCAAGAAAGAC 454
Query 366 GACATACTCTCTTTCGTCGCAACTGAGATTTTCGGTGGTCTCGTTACGTATC-AGAAGAT 424
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 455 GACATACTCTCTTTCGTCGCAACTGAGATTTTCGGTGGTCTCGTTACGTA-CGAGAAGAT 513
Query 425 CAGTGAGGCTAACAAAATCCCTAACCCAGA-CAAAATCGAAATCGGTCAAAAGTTTTGGA 483
|||||||| ||||||||||||| |||| || |||||||||||||||||||||||||||||
Sbjct 514 CAGTGAGGTTAACAAAATCCCTGACCC-GAACAAAATCGAAATCGGTCAAAAGTTTTGGA 572
Query 484 TCCCTTTGCCTTGTAGCTGTGATAAATTGAACGGTGAGGATGTTGTTCACTACGCACACG 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 573 TCCCTTTGCCTTGTAGCTGTGATAAATTGAACGGTGAGGATGTTGTTCACTACGCACATG 632
Query 544 TGGTTAAACTAGGGAGCTCTCTCCGTGAGATCGCTACTCAGTTTGGAACGGACAACACGA 603
| || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 633 TAGTCAAACTAGGGAGCTCTCTCGGTGAGATCGCTGCTCAGTTTGGAACGGACAACACGA 692
Query 604 CGTTGGCTCAGCTTAATGGAATCATCGGTGACTCTCAGCTTCTTGCTGATAATCCTCTTA 663
||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 693 CGTTGGCTCAGCTCAATGGAATCATTGGTGACTCTCAGCTTCTTGCTGATAAACCTCTCG 752
Query 664 ACGTCCCTCTCAAAGCTTGTAGCTCTTCTGTGAGGAACGACTCGTTGGATGCTCCTCTGC 723
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 753 ACGTCCCTCTCAAAGCTTGTAGCTCTTCTGTGAGGAAGGACTCGTTGGATGCTCCTCTGC 812
Query 724 TTCTGTCTAACAACTCATACGCCTTCACTGCAAACACTTGCATCAAGTGTTCTTGTGACG 783
||||||||||||||||||||| |||||||||||||| |||| |||||||| |||||||||
Sbjct 813 TTCTGTCTAACAACTCATACGTCTTCACTGCAAACAATTGCGTCAAGTGTACTTGTGACG 872
Query 784 CTTCAAAGAATTGGACTTTAAGCTGTGAACCATC-TC--AGATTAGGCCTTCGAATTCGA 840
||| ||||||||||||||||||||| || |||| || |||||| ||||||||| |
Sbjct 873 CTTTGAAGAATTGGACTTTAAGCTGTCAATCATCATCTGAGATTAAGCCTTCGAA--C-- 928
Query 841 CATGGCCAACTTGCCCGCC-TT--CACGATGCGAAGGAGCAGAGAGTTTGTTTCTAGGCA 897
|||| ||| ||||| || || ||| ||| || ||||| |||| || | ||
Sbjct 929 --TGGCAAACCTGCCCACCATTTTCACAATGTGATGGAGC------TTTGCTTA-ACGC- 978
Query 898 ACACGACTAGCAGCTCTTGCGGACCTCGTTCTTGCA-CATATGCTGGTTACTCCAACCAG 956
| | | |||| | ||||||| |||| | ||||||||||||||||||||
Sbjct 979 -CTCT--T-GCAGA-CA-----ACCTCGTGATTGCGTC-TATGCTGGTTACTCCAACCAA 1027
Query 957 ACCATCTTCACCACA-CTTTCCCCAACTTGTCCAGATTCTGCTGGTCCTGGTAACTATGC 1015
||||||||||||||| ||| ||||| |||||||||||||||||||||||| |||||||||
Sbjct 1028 ACCATCTTCACCACAGCTT-CCCCAGCTTGTCCAGATTCTGCTGGTCCTGATAACTATGC 1086
Query 1016 ATCAACATTCAGCTCAAGCTTCAATTTCGTGATGGTTTTGATTCAGTGTGCTTTGCTTTG 1075
|||||| ||||||||||||||||||||||||| || ||||||||||||||| |||||||
Sbjct 1087 ATCAACGCTCAGCTCAAGCTTCAATTTCGTGATTGTGTTGATTCAGTGTGCTCTGCTTTG 1146
Query 1076 TCTCTGTCTTCTCTAGTAGTGTTTTGTTGTTGTGTT 1111
|||||| ||||||||||| ||||||||||| |||||
Sbjct 1147 TCTCTGCCTTCTCTAGTAATGTTTTGTTGT-GTGTT 1181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54467591325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5