BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg931636 Length=763 Score E Sequences producing significant alignments: (Bits) Value AT2G17730.2 | Symbols: NIP2 | NEP-interacting protein 2 | chr2:... 1125 0.0 AT4G35840.1 | Symbols: | RING/U-box superfamily protein | chr4... 664 0.0 > AT2G17730.2 | Symbols: NIP2 | NEP-interacting protein 2 | chr2:7703947-7705748 FORWARD LENGTH=1269 Length=1269 Score = 1125 bits (609), Expect = 0.0 Identities = 682/717 (95%), Gaps = 6/717 (1%) Strand=Plus/Plus Query 1 GTTTCTGGGTTCTTAAGAAAAACATGG---C--C-TCATCATCATCTTATAGATTCCAAT 54 ||||||||||||||||||| ||||||| | | ||||||||||||||||||||||||| Sbjct 173 GTTTCTGGGTTCTTAAGAATAACATGGCCTCGTCATCATCATCATCTTATAGATTCCAAT 232 Query 55 CTGGGTTTTGTCCTCTTTCGTCAAGTCCTTCTCTTGGGAATTTCGTCGAACGGATTAAAG 114 |||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 233 CTGGGTCTTACCCTCTTTCGTCAAGTCCTTCTCTTGGGAATTTCGTCGAACGCATTAAAG 292 Query 115 ACGCTTGTCATTTCCTTGTCTCTGCTGTTTTTGGTACCATTATCTCGGCGATCTTGACCT 174 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 293 ACGCTTGTCATTTCCTTGTCTCTGCTGTTTTGGGTACCATTATCTCCGCGATCTTGACCT 352 Query 175 TCTTCTTCGCACTAGTGGGAACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAG 234 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 353 TCTTCTTCGCACTAGTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAG 412 Query 235 AAACTGAGAGTGGTTTCATTAGAGGAGCAGCAATTGGAGCCATTTCTGGAGCTGTTTTCT 294 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 413 AAACTGAGAGTGGTTTCATTAGAGGAGCAGCAATTGGAGCCATTTCGGGAGCTGTTTTCT 472 Query 295 CTATTGAGGTCTTTGAATCATCACTTGATCTCTGGAAATCCGATGAGTCGGGTTTCGGTT 354 |||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct 473 CTATCGAGGTCTTTGAATCATCTCTGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGAT 532 Query 355 GTTTTCTCTACTTGATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAAC 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 533 GTTTTCTCTACTTGATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGC 592 Query 415 GCATTGGTCCTGCAATGCTAAGTGCGGTGCAAAGTCAAATGGGAGCTGTGGATGCAGCCT 474 ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | Sbjct 593 GCATTGGTCCTGCAATGCTAAGTGCAGTGCAAAGTCAAATGGGAGCTGTGGATACAGCTT 652 Query 475 TTGATGATCACACTAGCCTCTTTGATACAGGAGGCTCAAAAGGATTAACAGGAGAACTTG 534 ||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||| Sbjct 653 TTGATGATCACACAAGCCTTTTTGATACAGGAGGCTCAAAAGGATTGACAGGAGACCTTG 712 Query 535 TTGAGAAAATCCCAAAGATGACAATCACTGGCAACAATAACACCGATGCTCCTGAAAACA 594 ||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| Sbjct 713 TTGAGAAAATCCCAAAGATGACAATCACTGGCAACAATAACACTGATGCTTCTGAGAACA 772 Query 595 GAGACCCCTGTTCTGTTTGTCTTCAGGATTTCCAGCTTGGTGAAACAGTTAGAAGCTTGC 654 |||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 773 CAGACTCATGTTCTGTTTGTCTTCAGGATTTCCAGCTCGGTGAAACAGTTAGAAGCTTGC 832 Query 655 CTCATTGTCATCACATGTTTCACTTACCTTGCATAGACAATTGGCTCCTCAGACACG 711 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 833 CTCATTGTCATCACATGTTTCACTTACCTTGCATAGACAATTGGCTCCTTAGACACG 889 > AT4G35840.1 | Symbols: | RING/U-box superfamily protein | chr4:16980961-16982365 FORWARD LENGTH=932 Length=932 Score = 664 bits (359), Expect = 0.0 Identities = 599/716 (84%), Gaps = 12/716 (2%) Strand=Plus/Plus Query 39 TCTTATAGATTCCAATCTGGGTTTTGTCCTCTTTCGTCAAGTCCTTCTCTTGGGAATTTC 98 |||| ||||||||||||||||||||||||| | || || |||| ||||||| ||||||| Sbjct 129 TCTTCTAGATTCCAATCTGGGTTTTGTCCTATCTCTTCGTGTCCCTCTCTTGAGAATTTC 188 Query 99 GTCGAACGGATTAAAGACGCTTGTCATTTC-CTTGTCTCTGCTGTTTTTGGTACCATTAT 157 ||||| ||||||||||||| |||| |||| | |||| |||||| | || || ||| | Sbjct 189 ATCGAAAGGATTAAAGACGCATGTCGTTTCAC-CCTCTCCGCTGTTCTAGGGACAATTCT 247 Query 158 CTCGGCGATCTTGACCTTCTTCTTCGCACTAGTGGGAACATTGCTAGGGGCACTTACAGG 217 ||||||| ||||||| ||||||||||| ||||||| |||||||| || |||||||| || Sbjct 248 CTCGGCGGTCTTGACTTTCTTCTTCGCTTTAGTGGGCACATTGCTTGGAGCACTTACTGG 307 Query 218 AGCTTTGATAGGTCAAGAAACTGAGAGT-GGTTTCATTAGAGGAGCAGCAATTGGAGCCA 276 |||||||||||| |||||||| || ||| ||||| || ||||||| || ||||||||| Sbjct 308 AGCTTTGATAGGCCAAGAAACCGAAAGTGGGTTT-ATCCGAGGAGCGGCGGTTGGAGCCA 366 Query 277 TTTCTGGAGCTGTTTTCTCTATTGAGGTCTTTGAATCATCACTTGATCTCTGGAAATCCG 336 |||| ||||||||||||||||| || |||||||| ||||| |||| ||| |||||||| Sbjct 367 TTTCGGGAGCTGTTTTCTCTATCGAAGTCTTTGAGTCATCTCTTGTTCTTTGGAAATCTA 426 Query 337 ATGAGTCGGGTTTCGGTTGTTTTCTCTACTTGATTGATGTCATTGTTAGTCTTCTAAGCG 396 ||||||| |||| || ||| | ||||||||||||||||||||||||||||| |||| | Sbjct 427 ATGAGTCACGTTTTGGATGTCTCCTCTACTTGATTGATGTCATTGTTAGTCTGATAAGTG 486 Query 397 GGAGACTTGTACGAGAACGCATTGGTCCTGCAATGCTAAGTGCGGTGCAAAGTCAAATGG 456 | |||||||| || ||||| || ||||| ||||||||||||||||| |||||||| |||| Sbjct 487 GTAGACTTGTGCGGGAACGAATAGGTCCAGCAATGCTAAGTGCGGTTCAAAGTCAGATGG 546 Query 457 GAGCTGTGGATGCAGCCTTT-GATGATCACACTAGCCTCTTT-GATACAGGAGGCTCAAA 514 ||||||||||| || | ||| || || | | | || | ||| ||||| || |||||||| Sbjct 547 GAGCTGTGGATTCAAC-TTTCGAAGAGCTCTCGAGTAT-TTTCGATACCGGTGGCTCAAA 604 Query 515 AGGATTAACAGGAGAACTTG-TTGAGAAAATCCC-AAAGATGACAATCACTGGCAACAAT 572 || ||||||||||| ||| |||| ||||| || ||| || | |||||||||||| || Sbjct 605 GGGGTTAACAGGAGAT-TTGGTTGATAAAATACCTAAA-ATCAAAATCACTGGCAAAAAC 662 Query 573 AACACCGATGCTCCTGAAAACAGAGACCCCTGTTCTGTTTGTCTTCAGGATTTCCAGCTT 632 ||| |||||| ||| |||| |||| | ||||||||||||||||||||||| || ||| Sbjct 663 AACTTAGATGCTTCTGGCAACAAAGACTCATGTTCTGTTTGTCTTCAGGATTTTCAACTT 722 Query 633 GGTGAAACAGTTAGAAGCTTGCCTCATTGTCATCACATGTTTCACTTACCTTGCATAGAC 692 |||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 723 GGTGAAACGGTGAGAAGCTTGCCACATTGTCATCACATGTTTCACTTGCCTTGCATAGAC 782 Query 693 AATTGGCTCCTCAGACACGGTTCTTGCCCGATGTGTAGACGTGACCTTTAATCTCT 748 ||||||||| |||| ||||| ||||| || ||||||||||| || || |||||||| Sbjct 783 AATTGGCTCTTCAGGCACGGATCTTGTCCAATGTGTAGACGCGATCTGTAATCTCT 838 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37072800486 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5