BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg931728 Length=826 Score E Sequences producing significant alignments: (Bits) Value AT2G18350.1 | Symbols: AtHB24, HB24, ZHD6 | homeobox protein 24... 1227 0.0 > AT2G18350.1 | Symbols: AtHB24, HB24, ZHD6 | homeobox protein 24 | chr2:7971017-7972081 REVERSE LENGTH=1065 Length=1065 Score = 1227 bits (664), Expect = 0.0 Identities = 777/831 (94%), Gaps = 9/831 (1%) Strand=Plus/Plus Query 1 AAGCTTCaagatcagaagaa-atggaagttagagagaagaaagatgagaaaatggagata 59 ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 152 AAGCTTCAAGATCAGAA-AAGATGGAAGTTAGAGAGAAGAAAGATGAGAAAATGGAGATG 210 Query 60 acaagaagaCAATCATCAGCTCTAGACCATCGTCTTCTTCCTCCGTACACTTAC-CCTCA 118 ||||||||| |||||||||||||||| |||| || ||||||||||||||||||| || || Sbjct 211 ACAAGAAGAAAATCATCAGCTCTAGATCATCATCGTCTTCCTCCGTACACTTACTCC-CA 269 Query 119 AACCGCCGACAAAGAGAAACCCACCACCAAAAGAAACGGGTCGGAACCGGATCCGGATCC 178 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 270 AACCGCCAACAAAGAGAAACCCACCACCAAAAGAAACGGGTCGGACCCGGATCCGGATCC 329 Query 179 GGATCTTGATACCAACCCAATTTCTATAGCTCCTGCTCCAAGATCATACGTTAGGCCTCA 238 |||||||||||| ||||||||||||||| ||| ||||||||||||||||| ||||||||| Sbjct 330 GGATCTTGATACTAACCCAATTTCTATATCTCATGCTCCAAGATCATACGCTAGGCCTCA 389 Query 239 AACTACTTCTCCGGGGAAGGCGAGGTATAGAGAATGCCAAAAGAACCACGTGGCGAGCTC 298 ||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||| Sbjct 390 AACTACTTCTCCGGGGAAGGCAAGGTATAGAGAATGCCAAAAGAATCACGCGGCGAGCTC 449 Query 299 CGGTGGCCACGTGGTAGACGGTTGCGGCGAGTTTATGCCTTCCGGTGAAGAGGGTACGGC 358 |||||| ||||| || ||||||||||||||||||||| ||||||| ||||| || |||| Sbjct 450 CGGTGGACACGTTGTCGACGGTTGCGGCGAGTTTATGTCTTCCGGGGAAGAAGGCACGGT 509 Query 359 GGAGTCTCTTATTTGTGCAGCTTGTGATTGTCACCGGAGCTTCCATAGGAAAGAGATCGA 418 |||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 510 GGAGTCTCTTCTTTGTGCAGCTTGTGATTGCCACCGGAGCTTCCATAGAAAAGAGATCGA 569 Query 419 TGGTTTGTTTGTTGTCAATTTCAATAGCTTTGGCCATTCTCAGAGGCCACTCGTTAGCCG 478 ||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| Sbjct 570 TGGTTTGTTTGTTGTCAATTTCAATAGCTTTGGCCATTCACAGAGACCACTCGGAAGCCG 629 Query 479 CCACGTGTCTCCGATAATGATGAGCTTCGGTGGCGGTGGT-G--GTGCGGCGGAGTCATC 535 |||||||||||||||||||||||| || ||||| |||||| | |||||||||||||||| Sbjct 630 CCACGTGTCTCCGATAATGATGAGTTTTGGTGGTGGTGGTGGTTGTGCGGCGGAGTCATC 689 Query 536 GACGGAGGATCTAAACAAATTTCATCAATCTTTTAGTGGTAATGGAGTGGATCAATTTCA 595 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| Sbjct 690 GACGGAGGATCTAAACAAGTTTCATCAATCTTTTAGTGGTTATGGAGTGGATCAGTTTCA 749 Query 596 TCAGTATCAGCCCAAGAAACGGTTTAGGACAAAGTTCAATGAAGAACAGAAGGAGAAGAT 655 ||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 750 TCATTATCAACCCAAGAAACGGTTTAGGACAAAGTTTAATGAAGAACAGAAGGAGAAGAT 809 Query 656 GATGGAGTTTGCTGAGAAGATTGGTTGGAGAATAACTAAACAAGAAGACGATGAAGTGAA 715 ||||||||||||||||||||||||||||||||| || |||| |||||| ||||||||||| Sbjct 810 GATGGAGTTTGCTGAGAAGATTGGTTGGAGAATGACAAAACTAGAAGATGATGAAGTGAA 869 Query 716 TCGGTTTTGTCGTGAGATTAATGTGAAAAGACAAGTGTTTAAAGTTTGGATGCACAACAA 775 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 870 TCGGTTTTGTCGTGAGATTAAAGTTAAAAGACAAGTGTTTAAAGTTTGGATGCACAACAA 929 Query 776 TAAACAAGCAGCAAAGAAGAAGGATTTGTAAGAGACT-CTATATATACTAT 825 ||||||||||||||||||||||||||||||||||| | ||||||||| ||| Sbjct 930 TAAACAAGCAGCAAAGAAGAAGGATTTGTAAGAGATTTCTATATATA-TAT 979 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40237551747 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5