BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931790
Length=2703
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34450.1 | Symbols: | coatomer gamma-2 subunit, putative / ... 3094 0.0
AT2G16200.2 | Symbols: | structural molecules | chr2:7024607-7... 307 3e-82
> AT4G34450.1 | Symbols: | coatomer gamma-2 subunit, putative
/ gamma-2 coat protein, putative / gamma-2 COP, putative | chr4:16471835-16477021
FORWARD LENGTH=3008
Length=3008
Score = 3094 bits (1675), Expect = 0.0
Identities = 2360/2692 (88%), Gaps = 42/2692 (2%)
Strand=Plus/Plus
Query 12 AGATCAGCGATGGCGCAACCACTCGTGAAGAAAGACGACGATCACGATGATGAGCTGGAG 71
||||||| ||||||||||| ||||||||||||||||| |||||||| |||||| |||||
Sbjct 113 AGATCAGAAATGGCGCAACCCCTCGTGAAGAAAGACGATGATCACGACGATGAGTTGGAG 172
Query 72 TATTCTCCATTCGTGGGAATTGAGAAAGGAGCAGTGCTTCAGGAAGCTAGAGTCTTCAAT 131
|||||||||||| ||||||||||||||||||| || ||||| || ||||||||||| |||
Sbjct 173 TATTCTCCATTCATGGGAATTGAGAAAGGAGCGGTTCTTCAAGAGGCTAGAGTCTTTAAT 232
Query 132 GATCCTCAGCTTGATCCTAGAAGGTGTTCCCAGGTCATCACAAAACTTCTTTATTTGCTT 191
|| |||||| ||||||||||| | || ||||||||||| || || |||||||||||||||
Sbjct 233 GACCCTCAGGTTGATCCTAGACGATGCTCCCAGGTCATTACGAAGCTTCTTTATTTGCTT 292
Query 192 AACCAAGGAGAGTCATTCACAAAGGTTGAAGCAACAGAAGTTTTCTTTTCCGTTACAAAG 251
|||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 293 AACCAAGGGGAGTCATTCACCAAGGTTGAAGCAACGGAAGTTTTCTTTTCAGTTACAAAG 352
Query 252 CTTTTCCAATCAAAAGATACTGGTTTGAGGAGAATGGTCTACTTGATCATAAAGGAATTA 311
||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||| |||
Sbjct 353 CTTTTTCAATCAAAAGACACGGGTTTGAGGAGAATGGTCTACTTGATCATTAAGGAGTTA 412
Query 312 TCTCCATCAGCTGACGAGGTTATTATTGTAACAAGCTCCT-TGATGAAGGACATGAATAG 370
||||||||| |||| |||||||| || |||||||||| || |||||||||| ||||||||
Sbjct 413 TCTCCATCATCTGATGAGGTTATCATCGTAACAAGCT-CTCTGATGAAGGATATGAATAG 471
Query 371 TAAGATTGATATGTATCGTGCAAATGCTATCCGTGTCCTGTGCCGAATAATAGACGGAAC 430
||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 472 TAAAATTGATATGTATCGAGCAAATGCTATCCGTGTCCTCTGCCGGATAATAGACGGAAC 531
Query 431 CCTTCTGACACAAATTGAGCGGTACTTGAAACAAGCTATTGTGGATAAGAATCCTGTTGT 490
|||||| || || |||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 532 CCTTCTCACTCAGATTGAGCGATACTTGAAACAAGCCATTGTGGATAAGAATCCCGTTGT 591
Query 491 TTCAAGTGCAGCTTTAGTCAGTGGACTTCACATGCTAAAGACAAACCCAGAAATTGTTAA 550
|||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct 592 TTCAAGTGCAGCTTTAGTCAGTGGGCTTCACTTGCTCAAGACAAACCCAGAAATTGTTAA 651
Query 551 AAGATGGAGCAACGAGGTTCAAGAAGCTGTCCAGTCCAGGGCAGCCCTTGTTCAGTTTCA 610
|||||||||||| || |||||||||| | | || ||||| |||||||||||||||| ||
Sbjct 652 AAGATGGAGCAATGAAGTTCAAGAAGGTATTCAATCCAGATCAGCCCTTGTTCAGTTCCA 711
Query 611 TGCCTTGGCTTTGCTTCATCAGATACGCCAAAATGACCGCTTGGCTGTCAGCAAGTTGGT 670
|||| | |||||||| |||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 712 TGCCCTAGCTTTGCTCCATCAGATACGCCAAAATGATCGCTTGGCTGTTAGCAAATTGGT 771
Query 671 TGGTACCTTGACCAGGGGAGCTGTCCGCTCT-CCTCTGGCCCAGTGCCTCTTGATACGTT 729
||||| ||||||||||||| ||||||||||| ||| |||| ||||| || ||||||||||
Sbjct 772 TGGTAGCTTGACCAGGGGATCTGTCCGCTCTCCCT-TGGCTCAGTGTCTTTTGATACGTT 830
Query 730 ACACCAGTCAGATAATCCGAGACATGTCCAACCATGGCCAGTCTGGGGAACGTCCGTTCT 789
||||||| ||| | ||||| |||||| ||||||| || || ||||| |||||||||||||
Sbjct 831 ACACCAGCCAGGTTATCCGTGACATGGCCAACCACGGTCAATCTGGAGAACGTCCGTTCT 890
Query 790 ATG-ATTTCCTGGAGAGTTGTCTGCGCCATAAGGCAGAAATGGTGATCCTTGAGGCTGCC 848
||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 891 ATGAATTT-TTGGAGAGTTGCCTGCGCCATAAGGCAGAAATGGTGATCCTTGAGGCTGCC 949
Query 849 AGAGCTATAACTGAGCTTGATAATGTGACCAGTCGAGAATTGACTCCAGCAATTACGGTG 908
|| || || |||||||||||| |||||| || |||||| ||||||||||||| || ||
Sbjct 950 AGGGCAATTACTGAGCTTGATGGTGTGACAAGCCGAGAACTGACTCCAGCAATCACTGTT 1009
Query 909 CTTCAGCTCTTCCTGAGTTCCCCTAAACCGGTGCTGAGATTTGCTGCTGTCCGGACTTTG 968
||||||||||| |||||||||| | ||| ||| |||||||||| |||||||||||| ||
Sbjct 1010 CTTCAGCTCTTTTTGAGTTCCCCCAGACCAGTGTTGAGATTTGCCGCTGTCCGGACTCTG 1069
Query 969 AACAAGGTTGCAATGACTCATCCCATGGCTGTCACCAACTGCAACATTGATATGGAGAGT 1028
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1070 AACAAGGTTGCAATGACTCATCCTATGGCTGTCACCAACTGCAACATTGATATGGAGAGT 1129
Query 1029 TTAATTTCTGATCAGAATAGAAGTATTGCTACACTTGCTATCACCACACTCCTGAAAACA 1088
||||| |||||||| |||||||| ||||||||||| || || |||||||| ||||||||
Sbjct 1130 TTAATCTCTGATCAAAATAGAAGCATTGCTACACTCGCAATAACCACACTATTGAAAACA 1189
Query 1089 GGGAATGAATCTAGTGTGGAACGGTTGATGAAGCAGATAACTAATTTCATGTCAGATATT 1148
||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1190 GGGAACGAATCAAGTGTAGAACGTTTGATGAAGCAGATAACTAATTTTATGTCAGATATT 1249
Query 1149 GCTGATGAGTTCAAAATTGTGGTCGTGGAAGCCATAAGATCACTGTGTTTGAAATTTCCA 1208
||||||||||||||||||||||||||||| || |||||||| ||||| ||||||| |||
Sbjct 1250 GCTGATGAGTTCAAAATTGTGGTCGTGGACGCAATAAGATCGTTGTGTGTGAAATTCCCA 1309
Query 1209 TTGAAGTATAGATCACT-GATGAACTTCTTAAGCAACATTCTTAGAGAAGAAGGTGGTTT 1267
|||| || ||||| || ||||| ||||||||||||||||||||| ||||||||||| ||
Sbjct 1310 CTGAAATACAGATC-CTTGATGACCTTCTTAAGCAACATTCTTAGGGAAGAAGGTGGATT 1368
Query 1268 TGAGTTTAAAAGGGCAATTGTAGATTCCATTGTAACCATTATCAGAGATATTCCAGATGC 1327
||||| |||||| ||||| |||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1369 TGAGTATAAAAGAGCAATAGTAGATTCTATTGTGACCATTATCAGAGATATTCCGGATGC 1428
Query 1328 AAAGGAAAATGGATTGCTCCATCTTTGCGAGTTCATCGAAGATTGTGAATTCACATATCT 1387
|||||||| |||| |||| ||||| || || ||||| |||||||||||||||||||||||
Sbjct 1429 AAAGGAAAGTGGACTGCTTCATCTATGTGAATTCATTGAAGATTGTGAATTCACATATCT 1488
Query 1388 TTCAACACAGATACTTCATTTCCTGGGAATGGAAGGGCCAAACACCTCAGATCCTAGCAA 1447
|||||||||||| |||||||| |||||||| || ||||| |||||||||||||| |||||
Sbjct 1489 TTCAACACAGATCCTTCATTTTCTGGGAATTGAGGGGCCTAACACCTCAGATCCAAGCAA 1548
Query 1448 GTATATCCGTTATATATATAACCGTGTGCATTTGGAGAATGCAACTGTTCGAGCTGCTGC 1507
|||||| || ||||||||||| ||||||||| | || || || ||||| || ||||||||
Sbjct 1549 GTATATACGATATATATATAATCGTGTGCATCTAGAAAACGCCACTGTCCGGGCTGCTGC 1608
Query 1508 TGTTTGCACACTTGCAAAGTTTGGCTTTATGGTTAAAGCGTTGAAGCCCCGGATTACTGT 1567
||||| |||||||||||||||||| ||||||||| || | ||||||||||||||||||||
Sbjct 1609 TGTTTCCACACTTGCAAAGTTTGGGTTTATGGTTGAATCCTTGAAGCCCCGGATTACTGT 1668
Query 1568 -CTTGTTGAAGCGCTGCATCTATGACAGTGATGATGAGGTTCGTGATAGAGCAACACTCT 1626
|| |||||||| |||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 1669 TCTA-TTGAAGCGTTGCATCTATGACAGTGATGATGAGGTCCGTGATAGGGCAACACTAT 1727
Query 1627 TTTTGAGTATACTTGGTAATGATGGC-CTTGCTGACACTGAAAAAGATAGCATAG-AGTT 1684
||||||| | |||||| |||||| || | ||||||||| ||||| |||| || | ||
Sbjct 1728 ATTTGAGTGTTCTTGGTGGTGATGGTACT-GTTGACACTGATAAAGAGAGCA-AGGA-TT 1784
Query 1685 TC-TATTTGGTTCCCTGGAGGCCCCTCTTGTCAACTTGGAGACAAGTCTGAAAAACTATG 1743
|| |||||||||||||||||| ||||| |||||| |||| || |||||||| || ||||
Sbjct 1785 TCCTATTTGGTTCCCTGGAGGTTCCTCTAGTCAACATGGAAACTAGTCTGAAGAATTATG 1844
Query 1744 AGCCCTCTGAAGAAGCTTTTGATGTTGACTCTGTGCCTAAGGAAGTCAAATCGCAGCCGC 1803
||||||||||||||||||||||| | |||| || ||||||||||| ||||| ||||| |
Sbjct 1845 AGCCCTCTGAAGAAGCTTTTGATATCAACTCCGTACCTAAGGAAGTTAAATCTCAGCCCC 1904
Query 1804 TTGCAGAGAAGAAAGCCAAGGGTAAAAAGCCCACTGGTCTCGGTGCTCCACCACCTGCAC 1863
||||||||||||||||| |||||||||||||||||||||| ||||| |||||| ||||||
Sbjct 1905 TTGCAGAGAAGAAAGCCCAGGGTAAAAAGCCCACTGGTCTTGGTGCACCACCAGCTGCAC 1964
Query 1864 CTGTTTCTGGTTTTGATG-CTTATGAAAGAGTTCTATCATCCATTCCAGAGTTTGCTACC 1922
||| |||||||||||||| || |||||||| |||| |||||||||||||||||||| ||
Sbjct 1965 CTGCTTCTGGTTTTGATGGCT-ATGAAAGACTTCTCTCATCCATTCCAGAGTTTGCCGCC 2023
Query 1923 TTTGGCAAACTTTTCAAGTCATCTTCACCTGTGGAGCTAACTGAAGCAGAAACAGAATAC 1982
||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 2024 TTTGGAAAACTTTTCAAGTCTTCTTTACCTGTGGAGCTAACTGAAGCAGAAACAGAATAC 2083
Query 1983 TCAGTCAATGTTGTAAAGCATAT-TTTCGAGAGTCACGTTGTGTTTCAGTATAACTGCAC 2041
| ||||||||||| |||||||| ||| || ||||| || ||||||||||| ||||||||
Sbjct 2084 GCTGTCAATGTTGTTAAGCATATCTTT-GACAGTCATGTGGTGTTTCAGTACAACTGCAC 2142
Query 2042 AAACACAGTACCAGAGCAATTGTTGGAGAGGGTCAATGTCATTGTAGATGCTTCAGAAGC 2101
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2143 TAACACAATACCAGAGCAGTTGTTGGAGAGGGTCAATGTCATTGTAGATGCTTCAGAAGC 2202
Query 2102 GGAGGAGTTCAGTGAATTATCTTCTAAA--CCACTAAACTCACTCCCTTACGATTC-CCC 2158
||||| ||||||||| || |||| ||| || ||||||||||| ||||||||||| |||
Sbjct 2203 TGAGGAATTCAGTGAAGTAACTTC-AAAGGCC-CTAAACTCACTTCCTTACGATTCACCC 2260
Query 2159 TGGTCAGGCCTATGTGGCGTTTGAGAAGCCAGAAGGAGTACCTGCTGTTGGAAAGTTCTC 2218
||||| |||| ||||| ||||||||||||| || || ||||||||||||||||||||
Sbjct 2261 -GGTCAAGCCTTTGTGGTTTTTGAGAAGCCAGCTGGGGTCCCTGCTGTTGGAAAGTTCTC 2319
Query 2219 AAACACATTGACTTTCATTGTTAAGGAGGTTGAGCTAAGCACAGGTGAACCATTGGATGA 2278
||||||||||||||| |||||||||||||||| | ||||||||||||| || |||||
Sbjct 2320 CAACACATTGACTTTCGTTGTTAAGGAGGTTGACCCAAGCACAGGTGAAGCAGAAGATGA 2379
Query 2279 CGGTGTGGAAGATGAGTACCAGCTCGAGGACCTTGAGGTTGTCGCTGCTGACTACATGGT 2338
|| || ||||||||||||||||| ||||| ||||||||||| |||| || ||||||||
Sbjct 2380 TGGAGTAGAAGATGAGTACCAGCTAGAGGATCTTGAGGTTGTAGCTGGAGATTACATGGT 2439
Query 2339 -AAACGTCGGTGTCTCCAATTTCCGTAATGCATGGGAAAACATGGACGAGGGAA-ACGAG 2396
||| || ||||||||||||||| | ||||| ||||||| |||||| || | || | |||
Sbjct 2440 GAAA-GTGGGTGTCTCCAATTTCAGGAATGCGTGGGAAAGCATGGATGAAG-AAGATGAG 2497
Query 2397 CTTGTAGATGAGTACGGTCTAGGTCCAA-GAGACAGCTTAGGG-GAAGCTGTAAAAGCTG 2454
| |||||| || || || || || |||| |||| || || ||| ||||||||||| ||||
Sbjct 2498 CGTGTAGACGAATATGGCCTTGG-CCAAAGAGAGAGTTT-GGGAGAAGCTGTAAAGGCTG 2555
Query 2455 TAACTG-ATCTTCTTGGCATGCAGTCTTGTGAGGGTACAGAAATGGTTGCGAGCAACGCA 2513
| | || ||||||||||||||||| |||||||||| || || | || || ||| |||
Sbjct 2556 TCA-TGGATCTTCTTGGCATGCAGACTTGTGAGGGGACGGAGACAATTCCGCTCAATGCA 2614
Query 2514 AGGTCACACACATGTTTACTATCAGGTTTGTACATAGGGAACGTGAAAGTGTTGGTGAAG 2573
||||||||||| ||| || | |||||| |||||||||| |||||||||||||| |||| |
Sbjct 2615 AGGTCACACACGTGTCTATTGTCAGGTGTGTACATAGGCAACGTGAAAGTGTTAGTGAGG 2674
Query 2574 GCACAGTTTGGGATGGACAGCTCAAAGGAAATTGTAATGAAACTGGCTGTTAGAGCAGAG 2633
||||||||||| ||||||||||||||||| |||| |||||| ||| | |||||||| ||
Sbjct 2675 GCACAGTTTGGAATGGACAGCTCAAAGGACATTGCAATGAAGCTGACAGTTAGAGCTGAA 2734
Query 2634 GATCCAT-CTGTCAGC-GATGCGATTCACGC-ACTTGTTGCCAACGGCTAAA 2682
|| | | ||||| || || || ||||||| | ||||||||| ||||||||
Sbjct 2735 GA-CGTTTCTGTC-GCCGAGGCCATTCACGAGA-TTGTTGCCAGCGGCTAAA 2783
> AT2G16200.2 | Symbols: | structural molecules | chr2:7024607-7025231
FORWARD LENGTH=432
Length=432
Score = 307 bits (166), Expect = 3e-82
Identities = 186/196 (95%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 2487 GGTACAGAAATGGTTGCGAGCAACGCAAGGTCACACACATGTTTACTATCAGGTTTGTAC 2546
||||| || | |||||| ||||||||||| |||||||||||||||| ||||||||||||
Sbjct 111 GGTACGGAGACGGTTGCAAGCAACGCAAGATCACACACATGTTTACCATCAGGTTTGTAT 170
Query 2547 ATAGGGAACGTGAAAGTGTTGGTGAAGGCACAGTTTGGGATGGACAGCTCAAAGGAAATT 2606
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 171 ATAGGGAACGTGAAAGTGTTGGTGAAGGCACAGTTTGGAATGGACAGCTCAAAGGAAATT 230
Query 2607 GTAATGAAACTGGCTGTTAGAGCAGAGGATCCATCTGTCAGCGATGCGATTCACGCACTT 2666
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 231 GTAATGAAACTGGCTGTTCGAGCAGAGGATCCATCTGTCAGCGATGCGATTCACGCACTT 290
Query 2667 GTTGCCAACGGCTAAA 2682
||||| ||||||||||
Sbjct 291 GTTGCTAACGGCTAAA 306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134246739468
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5