BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931800
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16280.1 | Symbols: KCS9 | 3-ketoacyl-CoA synthase 9 | chr2:... 2534 0.0
AT4G34510.1 | Symbols: KCS17 | 3-ketoacyl-CoA synthase 17 | chr... 1029 0.0
> AT2G16280.1 | Symbols: KCS9 | 3-ketoacyl-CoA synthase 9 | chr2:7050944-7052897
FORWARD LENGTH=1954
Length=1954
Score = 2534 bits (1372), Expect = 0.0
Identities = 1513/1582 (96%), Gaps = 5/1582 (0%)
Strand=Plus/Plus
Query 1 TTCCATTTTTCTCGGAAGCCATGGAAGCTGCTAATGAGCCTGTTAATGGCGGATCCGTAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TTCCATTTTTCTCGGAAGCCATGGAAGCTGCTAATGAGCCTGTTAATGGCGGATCCGTAC 282
Query 61 AGATCCGAAC--AG-ACAACGAAAGACGAAAGCTTCCTAATTTCTTACAAAGCGTCAACA 117
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 AGATCCGAACAGAGAACAACGAAAGACGAAAGCTTCCTAATTTCTTACAAAGCGTCAACA 342
Query 118 TGAAATACGTCAAGCTAGGTTATCATTATCTCATTACTCATCTCTTCAAGCTCTGTTTGG 177
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 343 TGAAATACGTCAAGCTAGGTTATCATTACCTCATTACTCATCTCTTCAAGCTCTGTTTGG 402
Query 178 TTCCATTAATGGCGGTTTTAGTCACAGAGATCTCTCGATTAACCACTGACGATCTTTACC 237
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 403 TTCCATTAATGGCGGTTTTAGTCACAGAGATCTCTCGATTAACAACAGACGATCTTTACC 462
Query 238 AGATTTGGCTTCATCTTCAATACAATCTCGTTGCTTTCATCTTTCTCTCTGCTTTAGCCA 297
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 463 AGATTTGGCTTCATCTCCAATACAATCTCGTTGCTTTCATCTTTCTCTCTGCTTTAGCTA 522
Query 298 TTTTTGGCTCCACCGTTTATATCATGAGTCGTCCCAGATCCGTTTATCTCGTTGATTACT 357
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 523 TCTTTGGCTCCACCGTTTACATCATGAGTCGTCCCAGATCTGTTTATCTCGTTGATTACT 582
Query 358 CTTGTTATCTTCCTCCAGAGAGTCTTCAGGTTAAGTATCAGAAGTTTATGGATCATTCTA 417
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 CTTGTTATCTTCCTCCGGAGAGTCTTCAGGTTAAGTATCAGAAGTTTATGGATCATTCTA 642
Query 418 AGTTAATTGAAGATTTCAATGAGTCTTCTTTAGAGTTTCAGAGGAAGATTCTTGAACGTT 477
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 643 AGTTGATTGAAGATTTCAATGAGTCATCTTTAGAGTTTCAGAGGAAGATTCTTGAACGTT 702
Query 478 CTGGTTTAGGTGAAGAGACTTATCTCCCTGAAGCTTTACATTGTATCCCTCCGCGTCCGA 537
|||||||||| |||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 703 CTGGTTTAGGAGAAGAGACTTATCTCCCTGAAGCTTTACATTGTATCCCTCCGAGGCCTA 762
Query 538 CGATGATGGCGGCGCGGGAGGAAGCTGAGCAGGTAATGTTCGGTGCTCTCGATAAGCTTT 597
||||||||||||| || |||||| |||||||||||||||| |||||||| ||||||||||
Sbjct 763 CGATGATGGCGGCTCGTGAGGAATCTGAGCAGGTAATGTTTGGTGCTCTTGATAAGCTTT 822
Query 598 TCGAGAACACCGAGATTAACCCGAGGGATATTGGTGTGTTGGTTGTGAATTGTAGCTTGT 657
||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 823 TCGAGAATACCAAGATTAACCCTAGGGATATTGGTGTGTTGGTTGTGAATTGTAGCTTGT 882
Query 658 TTAATCCTACACCTTCGTTATCTGCTATGATTGTTAACAAGTATAAGCTTAGAGGGAATG 717
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 883 TTAATCCTACACCTTCGTTGTCAGCTATGATTGTTAACAAGTATAAGCTTAGAGGGAATG 942
Query 718 TTAAGAGTTTTAATCTTGGTGGAATGGGGTGTAGTGCGGGTGTTATCGCTATCGATTTAG 777
||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 943 TTAAGAGTTTTAACCTTGGTGGAATGGGGTGTAGTGCTGGTGTTATCTCTATCGATTTAG 1002
Query 778 CGAAAGATATGTTGCAAGTTCATAGGAATACTTATGCTGTTGTGGTTAGTACTGAGAATA 837
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1003 CTAAAGATATGTTGCAAGTTCATAGGAATACTTATGCTGTTGTGGTTAGTACTGAGAACA 1062
Query 838 TTACTCAGAATTGGTATTTTGGGAATAAGAAGGCAATGTTGATTCCGAATTGTTTGTTTC 897
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1063 TTACTCAGAATTGGTATTTTGGGAATAAGAAGGCTATGTTGATTCCGAATTGTTTGTTTC 1122
Query 898 GGGTTGGTGGTTCGGCGATTTTGTTGTCGAATAAGGGTAAGGATCGTAGACGGTCTAAGT 957
| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 1123 GTGTTGGTGGTTCGGCGATTTTGTTGTCGAACAAGGGGAAAGATCGTAGACGGTCTAAGT 1182
Query 958 ATAAG-TTGGTTCATACGGTTAGGACTCATAAAGGAGCTGTTGAGAAGGCTTTCAATTGT 1016
||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1183 ATAAGCTTG-TTCATACCGTTAGGACTCATAAAGGAGCTGTTGAGAAGGCTTTCAACTGT 1241
Query 1017 GTTTACCAAGAACAGGATGATAATGGGAAGACCGGGGTTTCTTTGTCGAAAGATCTTATG 1076
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1242 GTTTACCAAGAGCAAGATGATAATGGGAAGACCGGGGTTTCGTTGTCGAAAGATCTTATG 1301
Query 1077 GCTATAGCTGGGGAAGCTCTTAAGGCGAATATCACTACTTTGGGTCCTTTGGTTCTTCCT 1136
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1302 GCTATAGCTGGGGAAGCTCTTAAGGCGAATATCACTACTTTAGGTCCTTTGGTTCTTCCT 1361
Query 1137 ATAAGCGAGCAGATTCTGTTTTTCATGACTTTGGTTACGAAGAAATTGTTTAACGCTAAG 1196
||||| ||||||||||||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 1362 ATAAGTGAGCAGATTCTGTTTTTCATGACTTTGGTTACGAAGAAACTGTTTAACTCGAAG 1421
Query 1197 CTGAAGCCGTATATCCCGGATTTCAAGCTTGCGTTCGATCATTTCTGTATCCATGCTGGT 1256
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1422 CTGAAGCCGTATATTCCGGATTTCAAGCTTGCGTTTGATCATTTCTGTATCCATGCTGGT 1481
Query 1257 GGTAGAGCTGTGATTGATGAGCTAGAGAAGAATCTGCAGCTTTCTCAGACACACGTCGAG 1316
||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||
Sbjct 1482 GGTAGAGCTGTGATTGATGAGCTTGAGAAGAATCTGCAGCTTTCGCAGACTCATGTCGAG 1541
Query 1317 GCATCGAGAATGACACTGCACAGATTTGGAAACACATCATCGAGCTCGATTTGGTATGAA 1376
||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1542 GCATCCAGAATGACACTGCACAGATTTGGAAACACTTCTTCGAGCTCGATTTGGTATGAA 1601
Query 1377 CTGGCTTACATAGAGGCCAAAGGTAGAATGAAGAAAGGAAACCGGGTTTGGCAGATTGCT 1436
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1602 CTGGCTTACATAGAGGCTAAAGGTAGGATGAAGAAAGGAAACCGGGTTTGGCAGATTGCT 1661
Query 1437 TTTGGAAGTGGGTTTAAGTGTAACAGCGCGGTTTGGGTGGCTCTGCACAATGTTAAGCCT 1496
|||||||||||||||||||||||||| || |||||||||||||| ||||||| ||||||
Sbjct 1662 TTTGGAAGTGGGTTTAAGTGTAACAGTGCAGTTTGGGTGGCTCTAAACAATGTCAAGCCT 1721
Query 1497 TCGGTTAGTAGTCCATGGGAACACTGTATCGACCGATATCCGGTTAAGCTCGACTTCTGA 1556
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1722 TCGGTTAGTAGTCCGTGGGAACACTGCATCGACCGATATCCGGTTAAGCTCGACTTCTGA 1781
Query 1557 TTTAATCAAAAACCATTTGTTT 1578
|||||| |||||||||||||||
Sbjct 1782 TTTAATGAAAAACCATTTGTTT 1803
> AT4G34510.1 | Symbols: KCS17 | 3-ketoacyl-CoA synthase 17 | chr4:16491796-16493418
FORWARD LENGTH=1623
Length=1623
Score = 1029 bits (557), Expect = 0.0
Identities = 1056/1296 (81%), Gaps = 38/1296 (3%)
Strand=Plus/Plus
Query 294 GCCATTTTTGGCTCCACCGT-TTATATCATGAGTCGTCCCAGATCCGTTTATC-TCGTTG 351
|||||| | || |||| || || | ||||| ||| || |||||| | || | || | |
Sbjct 199 GCCATTGTCGGATCCATTGTCTTCT-TCATGTCTCGACCTAGATCCATCTACCTTC-TAG 256
Query 352 ATTACTCTTGTTATCTTCCTCCAGAGAGTCTTCAGGTTAAG-TATCAGAAGTTTATGGAT 410
|||||||||| || || || || ||||| | ||| || || ||||| || || ||
Sbjct 257 ATTACTCTTGCTACCTCCCGCCTTCGAGTCAAAAAGTT-AGCTACCAGAAATTCAT-GAA 314
Query 411 C-ATTCTAAG-TTAATTGAAGATTTCAATGAGTCTTCT-TTAGAGTTTCAGAGGAAGATT 467
| | ||| || || ||| ||||||||| || ||||| || ||||| |||||||||| |
Sbjct 315 CAACTCT-AGTTTGATTCAAGATTTCAGCGAAACTTCTCTT-GAGTTCCAGAGGAAGA-T 371
Query 468 CTTGA-ACGTTCTGGTTTAGGTGAAGAGACTTATCTCCCTGAAGCT-TTACATTGTATCC 525
||||| || |||||| | ||||||||||||||| | || || || || || | |||||
Sbjct 372 CTTGATTCGCTCTGGTCTCGGTGAAGAGACTTATTTACCGGATTCTATT-CACTCTATCC 430
Query 526 CTCCGCGTCCGACGAT-GATGGCGGCGCGGGAGGAAGCTGAGCAGGTAATGTTCGGTGCT 584
|||||||||| || || | | || ||||| || ||||| ||||||||||| ||||||||
Sbjct 431 CTCCGCGTCCTACTATGGCT-GCAGCGCGTGAAGAAGCGGAGCAGGTAATCTTCGGTGCA 489
Query 585 CTCGATAAGCTTTTCGAGAACACCGAGATTAACCCGAGGGATATTGGTG-TGTTGGTTGT 643
||||| || ||||||||||| || | || || || ||||| ||||||| | || |||||
Sbjct 490 CTCGACAATCTTTTCGAGAATACAAAAATCAATCCTAGGGAGATTGGTGTTCTT-GTTGT 548
Query 644 GAATTGTAGCTTGTTTAATCCTACACCTTCGTTATCTGCTATGATTGTTAACAAGTATAA 703
||||||||| |||||||| ||||| ||||| ||||| || ||||||||||||||||||||
Sbjct 549 GAATTGTAGTTTGTTTAACCCTACGCCTTCTTTATCCGCCATGATTGTTAACAAGTATAA 608
Query 704 GCTTAGAGGGAATGTTAAGAGTTTTAATCTTGGTGGAATGGGGTGTAGTGCGGGTGTTAT 763
||||||||| || ||||||| ||||| ||||| |||||||| |||||||| ||||||||
Sbjct 609 GCTTAGAGGAAACATTAAGAGCTTTAACCTTGGAGGAATGGGATGTAGTGCTGGTGTTAT 668
Query 764 CGCTATCGATTTAGCGAAAGATATGTTGCAAGTTCATAGGAATACTTATGCTGTTGTGGT 823
||| | ||| |||| | |||||||| ||| | |||||||| |||| |||| |||||||
Sbjct 669 CGCGGTAGATCTAGCTAGTGATATGTTACAAATCCATAGGAACACTTTTGCTCTTGTGGT 728
Query 824 TAGTACTGAGAATATTACTCAGAATTGGTATTTTGGGAATAAGAAGGCAATGTTGATTCC 883
|||||||||||| || |||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct 729 TAGTACTGAGAACATCACTCAGAATTGGTATTTTGGTAACAAGAAAGCAATGTTGATCCC 788
Query 884 GAATTGTTTGTTTCGGGTTGGTGGTTCGGCGATTTTG-TTGTCGAATAAGGGTAAGGATC 942
||||| |||||| | ||||||||||| ||| || || || ||||| ||| | |||||
Sbjct 789 TAATTGCTTGTTTAGAGTTGGTGGTTCCGCGGTTCTGCTT-TCGAACAAGCCTTTGGATC 847
Query 943 GTAGACGGTCTAAGTATAAG-TTGGTTCATACGGTTAGGACTCATAAAGGAGCTGTTGAG 1001
| | ||| || ||||||||| || ||||||||||| ||||||||||||||| ||| ||||
Sbjct 848 GAAAACGATCCAAGTATAAGCTT-GTTCATACGGTCAGGACTCATAAAGGATCTGATGAG 906
Query 1002 AAGGCTTTCAATTGTGTTTACCAAGAACAGGATGA-TAATGGGAAGACCGGGGTTTCTTT 1060
|| || ||||||||||| || |||||||| ||||| | | ||| ||||| ||||||||
Sbjct 907 AACGCATTCAATTGTGTGTATCAAGAACAAGATGAGT-GTTTGAAAACCGGAGTTTCTTT 965
Query 1061 GTCGAAAGATCTTATGGCTATAGCTGGGGAAGCTCTT-AAGGCGAATATCACTACTTTGG 1119
||| ||||||||||||||||||||||| |||||| || ||| ||||||||||| ||||||
Sbjct 966 GTCTAAAGATCTTATGGCTATAGCTGGAGAAGCT-TTAAAGACGAATATCACTTCTTTGG 1024
Query 1120 GTCCTTTGGTTCTTCCTATAAGCGAGCAGATTCTGTT-TTTCATGACTTTGGTTACGAAG 1178
||||| ||||||||||||||||||||||||||||||| ||| |||||| ||| | |||
Sbjct 1025 GTCCTCTGGTTCTTCCTATAAGCGAGCAGATTCTGTTCTTT-GCGACTTTTGTTGCTAAG 1083
Query 1179 AAATTGTTTAACG-C--TAAGCTGAAGCCGTATATCCCGGATTTCAAGCTTGCGTTCGAT 1235
| |||||| || | | ||| |||||| || || ||||||||||||||||| || |||
Sbjct 1084 AGATTGTTCAATGACAAGAAGAAGAAGCCTTACATACCGGATTTCAAGCTTGCTTTAGAT 1143
Query 1236 CATTTCTGTATCCATGCTGGTGGTAGAGCTGTGATTGATGAGCTAGAGAAGAATCTGCAG 1295
||||||||||| || || || |||||||| |||||||||||||||||||||| | | ||
Sbjct 1144 CATTTCTGTATTCACGCGGGAGGTAGAGCCGTGATTGATGAGCTAGAGAAGAGTTTAAAG 1203
Query 1296 CTTTCT-CAGACACACGTCGAGGCATCGAGAATGACACTGCACAGATTTGGAAACACATC 1354
|||||| || | ||| || ||||| || |||||||| |||| |||||||||||||| ||
Sbjct 1204 CTTTCTCCA-AAACATGTTGAGGCGTCTAGAATGACTTTGCATAGATTTGGAAACACTTC 1262
Query 1355 ATCGAGCTCGATTTGGTATGAACTGGCTTACATAGAGGCCAAAGGTAGAATGAAGAAAGG 1414
|| ||||| || ||||||||| ||||||||| || || ||||| ||||||| ||||||
Sbjct 1263 CTCTAGCTCTATATGGTATGAATTGGCTTACACGGAAGCTAAAGGAAGAATGAGGAAAGG 1322
Query 1415 AAACCGGGTTTGGCAGATTGCTTTTGGAAGTGGGTTTAAGTGTAACAGCGCGGTTTGGGT 1474
|||| | |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1323 AAACAGAGTTTGGCAGATTGCTTTTGGTAGCGGGTTTAAGTGTAACAGCGCGGTTTGGGT 1382
Query 1475 GGCTCTGCACAATGTTAAGCCTTCGGTTAGTAGTCCATGGGAACACTGTATCGACCGATA 1534
|||||| | |||||| |||| ||||||| | ||| |||||||| || ||| | ||||
Sbjct 1383 GGCTCTTCGCAATGTCGAGCCCTCGGTTAACAATCCTTGGGAACATTGCATCCATAGATA 1442
Query 1535 TCCGGTTAAGCTCGA-CTTCTGATTTAATCAAAAAC 1569
|||||||||| |||| ||| ||| | || ||||||
Sbjct 1443 TCCGGTTAAGATCGATCTT-TGAACTCAT-AAAAAC 1476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77911245840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5