BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931905
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20400.1 | Symbols: | myb-like HTH transcriptional regulato... 1151 0.0
> AT2G20400.1 | Symbols: | myb-like HTH transcriptional regulator
family protein | chr2:8799187-8801973 FORWARD LENGTH=1737
Length=1737
Score = 1151 bits (623), Expect = 0.0
Identities = 815/904 (90%), Gaps = 27/904 (3%)
Strand=Plus/Plus
Query 359 CCCCGAGACATCAGATTGGATTCCTTCTCCACTCCCGGATATTTTCGATTTTCCTTCGGG 418
|||||||||| ||||||||||||| ||||||||||| ||| ||| |||||||||||||
Sbjct 512 CCCCGAGACAACAGATTGGATTCCCTCTCCACTCCCCCATA-TTT--ATTTTCCTTCGGG 568
Query 419 TTCTCCCATTCAAATAATGGATGATGGTGTCATTGATGAGATTCACAAACAAAGTGACTT 478
|||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 569 TTCTCCCAATCTAATAATGGAGGATGGTGTCATTGATGAGATTCACAAACAAAGTGACTT 628
Query 479 GCCAGTTTGGGATGACCACTTGATTA-C-C-GATGGAGATTCC-CTGATGTCTAGTGTCT 534
|||| ||||| ||||| ||||||||| | | |||| ||| ||| || ||||||||| |||
Sbjct 629 GCCACTTTGGTATGACGACTTGATTACCACTGATGAAGA-TCCACTCATGTCTAGTATCT 687
Query 535 TGGAAGATCTTCTCCTTGACACTAATTTCAACTCAGCTTCAAAGGTCCAGCAACTAAGTA 594
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 688 TGGGCGATCTTCTCCTTGACACTAATTTCAACTCAGCTTCAAAGGTCCAGCAACCAAGTA 747
Query 595 TGCAATCGCAGATTCAACAACCCCAAGTTGTTCTTCCGCAGCCTTCTCCTTGTGTGGAAT 654
||||||||||||||||||||||||||| |||||| | |||||||||| ||||||||||||
Sbjct 748 TGCAATCGCAGATTCAACAACCCCAAGCTGTTCTGCAGCAGCCTTCTTCTTGTGTGGAAT 807
Query 655 TGCGACCACTTGTTAGGACAGTATCCTCAAACAGCAACAACAGTAACAATAGTAATAATA 714
|||| ||||||| ||||||||||||||||||||||||||||| || ||| || |||||
Sbjct 808 TGCGCCCACTTGATAGGACAGTATCCTCAAACAGCAACAACAATAGCAACAG---TAATA 864
Query 715 ATGCAGCAGCAGCAGCTAAGGGACGTATGCGTTGGACGCCTGAACTTCATGAGGTTTTTG 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 ATGCAGCAGCAGCAGCTAAGGGACGTATGCGTTGGACGCCTGAACTTCATGAGGTTTTTG 924
Query 775 TTGACGCTGTTAACCAGCTCGGTGGCAGTAATAAAGCAACTCCTAAGGGTGTCCTGAAGC 834
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 925 TTGACGCTGTTAACCAGCTCGGTGGCAGTAATGAAGCAACTCCTAAAGGTGTCCTGAAGC 984
Query 835 ATATGAAAGTCCAAGGTTTGACTATATATCATGTCAAAAGTCATTTGCAGAAGTATAGGT 894
||||||||||| ||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 985 ATATGAAAGTCGAAGGTTTGACTATTTTTCATGTCAAAAGTCATTTGCAGAAATATAGAA 1044
Query 895 CAGCTAAATATACACCAGAACCATCAGAAGGTCCGCCAGAGACAAAGTTGACACCGCTTG 954
|||||||||||| ||||| ||||||||||||| |||| ||| ||| ||||||||||||||
Sbjct 1045 CAGCTAAATATATACCAGTACCATCAGAAGGTTCGCCGGAGGCAAGGTTGACACCGCTTG 1104
Query 955 AGCAAATTAC----GA-GA--CG-----TGGGATAGATGTCACTGAGGCTCTGCGAATTC 1002
|||||||||| || || || |||||||||| |||||||| ||||||||||||
Sbjct 1105 AGCAAATTACATCTGATGATACGAAACGTGGGATAGATATCACTGAGACTCTGCGAATTC 1164
Query 1003 AGATGGAACTTCAGAAGAAATTGCATGAGCAGCTTGAGATTCAAAGAACAATGCAACTTC 1062
||||||||| |||||||||| |||||||||||||||||| || |||||||||||||||||
Sbjct 1165 AGATGGAACATCAGAAGAAACTGCATGAGCAGCTTGAGAGTCTAAGAACAATGCAACTTC 1224
Query 1063 GTATAGAAGAGCAAGGAAAGGCGTTGTTGATGATGTTTGAGAAGCAGAATATGGGTTTTG 1122
| ||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| |
Sbjct 1225 GGATAGAAGAGCAAGGAAAGGCGCTGTTGATGATGATTGAGAAGCAAAATATGGGTTTCG 1284
Query 1123 GTAAACCGGAACAAGAAGAGAAAAGAAGTGTGAAAACGTCTGAAAATGGTTTAGAGGACT 1182
| ||| ||||||| |||||||| ||||| ||||||| |||||||||||| |||||| |
Sbjct 1285 GCGGACCAGAACAAGGAGAGAAAACAAGTGCGAAAACGCCTGAAAATGGTTCAGAGGAGT 1344
Query 1183 CGGATTCCCCGCGGCCAAAGCGTCCGAGAAACGAAGAATGAAG-AA-CCTTTCT-CGGGA 1239
|||| |||||||||||||||||||||||||| ||||||||||| || ||||||| ||| |
Sbjct 1345 CGGAATCCCCGCGGCCAAAGCGTCCGAGAAATGAAGAATGAAGGAAACCTTTCTTCGG-A 1403
Query 1240 TGGT 1243
||||
Sbjct 1404 TGGT 1407
Score = 222 bits (120), Expect = 6e-57
Identities = 258/318 (81%), Gaps = 35/318 (11%)
Strand=Plus/Plus
Query 1 AGTAATTCAGAAACT-TAGtgatgatcccgaatgatgatgatgatgatgCAAATTCTATG 59
||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||
Sbjct 171 AGTAATTCAGAAACTCGAGTGATGATCCCG-A--ATGATGATGATGATGCAAATTCTATG 227
Query 60 GAGAATCGTCCG-T---TGA-G--G-T-C-AATTC-----CGAatgat--g----atgat 98
||||| |||| | ||| | | | | ||||| |||| || | |||||
Sbjct 228 AAGAATTATCCGTTAAATGATGATGATGCAAATTCTATGAAGAATTATCCGTTAAATGAT 287
Query 99 gatgatgCAAATTCTATGGAGAATCGTCTGCTGAGGTCAATTCCGAGGGAGCTTTCACAC 158
|||||||||||||||||||||||| || | | ||||||||||||| |||||||||||||
Sbjct 288 GATGATGCAAATTCTATGGAGAATTATCCGTTAAGGTCAATTCCGACGGAGCTTTCACAC 347
Query 159 ACTTCTTCATTGATACCA--T-CTTTACCAAACCCTTCAGAAGCAGCAG-A-A-ATGTCG 212
|||| ||||||||||||| | ||||||||||||||||||||||||||| | | |||||
Sbjct 348 ACTTGTTCATTGATACCACCTTCTTTACCAAACCCTTCAGAAGCAGCAGCAGACATGTCC 407
Query 213 T-CTAATTTAGAACACA-TCCAACTCATGGCAAATCCTTATCATCTACTCTCTGACAATG 270
| | |||| ||||| || || || ||||||||| |||| | || | ||| ||| |||||
Sbjct 408 TTC-AATTCAGAACTCAATCAAA-TCATGGCAAGGCCTTGTGATATGCTCCCTGCCAATG 465
Query 271 GTGGAGCTGTTGGTCATA 288
||||||||||||||||||
Sbjct 466 GTGGAGCTGTTGGTCATA 483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61094063265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5