BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931910
Length=1321
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20440.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 2226 0.0
AT4G28550.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 1286 0.0
> AT2G20440.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily
protein | chr2:8810741-8813523 REVERSE LENGTH=1711
Length=1711
Score = 2226 bits (1205), Expect = 0.0
Identities = 1283/1321 (97%), Gaps = 3/1321 (0%)
Strand=Plus/Plus
Query 3 gaagaagaagaa-gaagGTTGAATGTTTTGCTGCGGATTTATGTGGAAATCCGGAGGAGA 61
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GAACAAGAAGAAGGAAGGTTGAATGTTTTGCTGCGGATTTATGTGGAAATCCGGAGGAGA 178
Query 62 AGATTTGCAAGGTTTCTATCCAGTTAGACCTGAATGTCAACCAGATGTTCCAAGGACCCG 121
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 179 AGATTTGCAAGGTTTCTATCCAGTTAGACCTGAATGTCAACCAGATGTTCCCAGGACCCG 238
Query 122 TTTTAAATCAAGGGCTGGAAAGACTCTAAGTGCTAGAAGGTGGCATGCTGCGTTTACTGA 181
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 239 TTTTAAATCAAGGGCTGGAAAGACTCTAAGTGCTAGAAGATGGCACGCTGCCTTTACTGA 298
Query 182 AGATGGCCATTTGGATATGGAAAAAGTGCTTAGACGTATACAGCGCGGAGGAATTCATCC 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AGATGGCCATTTGGATATGGAAAAAGTGCTTAGACGTATACAGCGCGGAGGAATTCATCC 358
Query 242 CTCGATCAAGGGCGCTGTTTGGGAGTTTTTGCTAGGGTGCTACGATCCAGACAGCACTTT 301
|| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 359 TTCCATCAAAGGCGCTGTTTGGGAGTTTTTGTTAGGATGCTACGATCCAGACAGCACTTT 418
Query 302 TGAGGAAAGGAACATTCTGAGGAATCGCAGAAGGGAGCAGTACGGTGCATGGAAAGAAGA 361
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TGAGGAAAGGAACATACTGAGGAATCGCAGAAGGGAGCAGTACGGTGCATGGAAAGAAGA 478
Query 362 ATGTAAGAAAATGGTTCCTGTCATTGGTAGTGGCAAGTATGTCACAATGGCAGTGGTTCA 421
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 479 ATGTAAGAAAATGGTTCCTGTCATTGGTAGTGGCAAGTACGTCACAATGGCAGTCGTTCA 538
Query 422 AGAAAATGGGAACCCAATAGACGAATCTTCTGTAGAAAATCAAGGATGGATTGTGAAAAA 481
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 539 AGAAAATGGGAACCCAATAGACGAATCTTCTGTAGAAAACCAAGGATGGATCGTGAAAAA 598
Query 482 TGTC-GTTACAGATGAGAGAGTGCTACAGTGGATGCTCTCGCTACACCAGATCGGCCTTG 540
| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 599 -CACTGTTACAGATGAGAGAGTGCTACAATGGATGCTCTCACTACACCAGATCGGCCTTG 657
Query 541 ATGTTGCTAGAACAGATCGGTATCTCTGCTTTTATGAGAATGATCGTAATCAATCAAAAC 600
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 658 ATGTTGCTAGAACAGATCGGTATCTCTGTTTTTATGAGAATGATCGTAATCAATCAAAAC 717
Query 601 TGTGGGACGTTCTTGCCATATATACATGGTTGAATCTTGATATTGGTTATGTTCAGGGAA 660
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 718 TATGGGACGTTCTTGCCATATATACGTGGTTGAATCTTGATATTGGTTATGTTCAGGGAA 777
Query 661 TGAATGATATATGTTCCCCAATGATAATCCTCTTTGATGATGAAGCCGACGCTTTCTGGT 720
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 778 TGAATGATATATGTTCCCCAATGATAATCCTCTTTGATGATGAAGGCGACGCTTTCTGGT 837
Query 721 GCTTTGAGCGTGCAATGCGAAGACTAAGGGAAAATTTCAGGGCAACAGCAACATCAATGG 780
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 838 GCTTTGAGCGGGCAATGCGGAGACTAAGAGAAAATTTCAGGGCAACAGCAACATCAATGG 897
Query 781 GTGTCCAGACTCAGCTGGGTGTGCTCTCACAGGTCATTAAGACAGTGGATCCTCGTCTCC 840
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GTGTCCAGACTCAACTGGGTGTGCTCTCACAGGTCATTAAGACAGTGGATCCTCGTCTCC 957
Query 841 ATCAACATCTAGAGGATCTCGATGGTGGGGAGTATCTGTTTGCTATTCGGATGCTGATGG 900
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 958 ATCAACATCTAGAGGATCTCGATGGTGGGGAGTATCTATTTGCTATTCGGATGCTGATGG 1017
Query 901 TACTTTTCAGGAGAGAATTCTCCTTCCTTGACGCTTTGTACCTTTGGGAGCTGATGTGGG 960
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1018 TACTTTTCAGGAGAGAATTCTCTTTCCTTGACGCTTTGTACCTTTGGGAGCTGATGTGGG 1077
Query 961 CGATGGAGTACAATCCAACCATGTTTGCAACATATGAGGAACTAGAAAACCGAAACAACG 1020
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1078 CGATGGAGTACAATCCAACCATGTTTGCAACGTACGAGGAACTAGAAAACCGAAACAACG 1137
Query 1021 CAGCATCCGATCCCAAGTTACTAAAACGGTATGGCAAGTTTGAAAGGAAATACATAAACA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CAGCATCCGATCCCAAGTTACTAAAACGGTATGGCAAGTTTGAAAGGAAATACATAAACA 1197
Query 1081 GTGGGCAGAACGAGCAACATCGCAATACGCTTGCTGTCTTTGTGGTCGCAAGCGTTCTAC 1140
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1198 GTGGGCAGAACGAGCAACATCGCAACACGCTTGCTGTTTTTGTGGTCGCAAGCGTTCTAC 1257
Query 1141 AGACAAAGAACAAACGTCTCTTGAAGGAGGCCAAAGGCTTAGACGATGTTGTTCAGATAC 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 AGACAAAGAACAAACGTCTCTTGAAGGAGGCCAAAGGCTTAGACGATGTTGTTCAGATAC 1317
Query 1201 TAGGAGACATTGCGGGTAATCTTGACGCGAAAAAAGCATGTAAAGAAGCGTTGAAGATCC 1260
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1318 TAGGAGACATTGCGGGTAATCTTGACGCCAAAAAAGCATGTAAAGAAGCGTTGAAGATCC 1377
Query 1261 ATGAAAAATTCCTGAAAAAGGCTAATAGTAATAAGCAATAAAGATTTGCTCAAAACCTCT 1320
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1378 ATGAAAAATTCCTGAAAAAGGCTAATAGTAATAAGCAATAAAGATTTGCTCAAAACTTCT 1437
Query 1321 A 1321
|
Sbjct 1438 A 1438
> AT4G28550.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily
protein | chr4:14110884-14113748 FORWARD LENGTH=1685
Length=1685
Score = 1286 bits (696), Expect = 0.0
Identities = 1095/1287 (85%), Gaps = 30/1287 (2%)
Strand=Plus/Plus
Query 20 TTGAATGTTTTGCTGCGGATTTATGTGGAAATCCGGAGGAGAAGATTTGCAAGGTTTCTA 79
||| ||| |||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 127 TTGTATGATTTGTTGTGGATTTATGTGGAAATCCGGAGGTGAAGATTTGCAAGGTTTCTA 186
Query 80 TCCAGTTAGACCTGAATGTCAACCAGATGTTCCAAGGACCCGTTTTAAATCAAGGGCTGG 139
|||||||||| |||||| | |||||||||| ||||| || |||||||||||||||||
Sbjct 187 TCCAGTTAGAGAAGAATGTGTAGCAGATGTTCCCAGGACTCGATTTAAATCAAGGGCTGG 246
Query 140 -AAAGACTCTAAGTGCTAGAAGGTGGCATGCTGCGTTTACTGAAGATGGCCATTTGGATA 198
||| ||||| |||||||||| ||||| ||||||||||||| |||||| ||||||||||
Sbjct 247 TAAA-ACTCTTAGTGCTAGAAAATGGCACGCTGCGTTTACTGGAGATGGACATTTGGATA 305
Query 199 TGGAAAAAGTGCTTAGACGTATACAGCGCGGAGGAATTCATCCCTCGATCAAGGGCGCTG 258
|||||| ||| ||| | ||||||||||| || |||||||||||||| ||||| || | |
Sbjct 306 TGGAAAGAGTTCTTCGCCGTATACAGCGAGGGGGAATTCATCCCTCAATCAAAGGAGAGG 365
Query 259 TTTGGGAGTTTTTGCTAGGGTGCT-ACGATCCAGACAGCACTTTTGAGGAAAGGAACAT- 316
|||||||||||||| |||| ||| |||||||||||||||||||||| ||| ||||||
Sbjct 366 TTTGGGAGTTTTTGTTAGGA-GCTTACGATCCAGACAGCACTTTTGAAGAACGGAACAAG 424
Query 317 TCTGAGGAATCGCAGAAGGGAGCAGTACGGTGCATGGAAAGAAGAATGTAAGAAAATGGT 376
| ||||||||| ||||||||||||||| ||| |||||||||||||||||||| |||||
Sbjct 425 T-TGAGGAATCACAGAAGGGAGCAGTATTATGCTTGGAAAGAAGAATGTAAGAATATGGT 483
Query 377 TCCTGTCATTGGTAGTGGCAAGTATGTCACAATGGCAGTGGTT-CAAGAAAATGGGAACC 435
|||| | ||||||| || |||| |||||| |||||||| ||| | ||| ||||| | |
Sbjct 484 TCCTCTTGTTGGTAGCGGAAAGTTTGTCACGATGGCAGTTGTTGCG-GAAGATGGGCAGC 542
Query 436 CAATAGACGAATCTTCTGTAGAAAATCAAGGATGGATTGTGAAAAATGTCGT-TA-CAGA 493
|| |||| ||||| || ||||| ||||||| |||| ||||||||| | | | || ||||
Sbjct 543 CATTAGAAGAATCCTCAGTAGACAATCAAGAATGGGTTGTGAAAACCG-C-TATAACAGA 600
Query 494 TGAGAGAGTGCTACAGTGGATGCTC-TCGCT-ACACCAGATCGGCCTTGATGTTGCTAGA 551
|| | ||||| ||||||||||| | | | | | | ||||| || ||||||| ||||
Sbjct 601 CAAGCGTGTGCTCCAGTGGATGCTTGT-GTTGAGTCAA-ATCGGTCTCGATGTTGTTAGA 658
Query 552 ACAGATCGGTATCTCTGCTTTTATGAGAATGATCGTAATCAATCAAAACTGTGGGACGTT 611
|| ||||||||||||||||||||||||| ||| |||||||| ||| ||| ||||| ||
Sbjct 659 ACGGATCGGTATCTCTGCTTTTATGAGAGTGAAAGTAATCAAGCAAGACTATGGGATATT 718
Query 612 CTTGCCATATATACATGGTTGAATCTTGATATTGGTTATGTTCAGGGAATGAATGATATA 671
||| |||| ||||||||||| |||| ||||||||| ||||||||||||||||| || |||
Sbjct 719 CTTTCCATCTATACATGGTTAAATCCTGATATTGGCTATGTTCAGGGAATGAACGACATA 778
Query 672 TGTTCCCCAATGATAATCCT-CTTTGATGATGAAGCCGACGCTTTCTGGTGCTTTGAGCG 730
|||||||| ||||||||||| ||| || ||||||||||||||||||||||||||||||||
Sbjct 779 TGTTCCCCCATGATAATCCTACTT-GAAGATGAAGCCGACGCTTTCTGGTGCTTTGAGCG 837
Query 731 TGCAATGCGAAGACTAAGGGAAAATTTCAGGGCAACAGCAACATCAATGGGTGTCCAGAC 790
|||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||
Sbjct 838 TGCAATGCGAAGACTAAGAGAAAATTTCAGGACAACAGCAACATCAATGGGCGTCCAGAC 897
Query 791 TCAGCTGGGTGTGCTCTCACAGGTCATTAAGACAGTGGATCCTCGTCTCCATCAACATCT 850
|||||||||| ||||||||||||||||||| || || |||||||| ||||||||||||||
Sbjct 898 TCAGCTGGGTATGCTCTCACAGGTCATTAAAACCGTTGATCCTCGGCTCCATCAACATCT 957
Query 851 AGAGGATCTCGATGGTGGGGAGTATCTGTTTGCTATTCGGATGCTGATGGTACTT-TTCA 909
||||||||||| ||||| ||||||||||||||||| || ||| |||||||| || ||||
Sbjct 958 TGAGGATCTCGACGGTGGAGAGTATCTGTTTGCTATACGAATGTTGATGGTA-TTGTTCA 1016
Query 910 GGAGAGAATTCTCCTTCCTTGACGCTTTGTACCTTTGGGAGCTGATGTGGGCGATGGAGT 969
| ||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 1017 GAAGAGAGTTTTCCTTCCTTGATGCTTTGTACCTTTGGGAGCTGATGTGGGCTATGGAAT 1076
Query 970 ACAATCCAACCATGTTTGCAACATATGAGGAACTAGAAAACC-GAAACAACGCAGCATC- 1027
||||||||| || ||||||| |||| || |||| | | ||| ||| |||| | ||
Sbjct 1077 ACAATCCAAACAAGTTTGCATCATACGAAGAACCACAGAACATGAA-CAACTCCTCAGGA 1135
Query 1028 C-G-ATCCCAAGTTACTAAAACGGTATGGCAAGTTTGAAAGGAAATACATAAACAGTGGG 1085
| | |||| | |||||| || | |||||| || ||||| || ||||| ||||| |||||
Sbjct 1136 CAGGATCCGAGGTTACTTAAGCAGTATGGAAAATTTGAGAGAAAATATATAAAGAGTGGC 1195
Query 1086 CAGAACGAGCAACATCGCAATACGCTTGCTGTCTTTGTGGTCGCAAGCGTTCTACAGACA 1145
|||||||||||||| | || ||||||||||| ||||| || || || ||||| | |||
Sbjct 1196 CAGAACGAGCAACA-C--AACACGCTTGCTGTTTTTGTTGTGGCTAGTGTTCTTGAAACA 1252
Query 1146 AAGAACAAACGTCTCTTGAAGGAGGCCAAAGGCTTAGACGATGTTGTTCAGATACTAGGA 1205
||||||||||||||||||||||| || |||||| |||| || |||||||||||| | |||
Sbjct 1253 AAGAACAAACGTCTCTTGAAGGAAGCTAAAGGCCTAGATGACGTTGTTCAGATATTGGGA 1312
Query 1206 GACATTGCGGGTAATCTTG-ACGCGAAAAAAGCATGTAAAGAAGCGTTGAAGATCCATGA 1264
| ||||| |||||| ||| |||||| |||||| |||||||||||||||||||| |||||
Sbjct 1313 GGTATTGCAGGTAAT-TTGGACGCGAGAAAAGCGTGTAAAGAAGCGTTGAAGATTCATGA 1371
Query 1265 AAAATTCCTGAAAAAGGCTAATAGTAA 1291
|||||||||||||||||||||||||||
Sbjct 1372 AAAATTCCTGAAAAAGGCTAATAGTAA 1398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65009705775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5