BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg931968 Length=325 Score E Sequences producing significant alignments: (Bits) Value AT2G20820.2 | Symbols: | unknown protein; Has 36 Blast hits to... 318 2e-86 > AT2G20820.2 | Symbols: | unknown protein; Has 36 Blast hits to 36 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:8964349-8965424 FORWARD LENGTH=597 Length=597 Score = 318 bits (172), Expect = 2e-86 Identities = 194/204 (95%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 1 TAAATCAGAAGTCGAGATCGATGGCGTCCTTCGCTCGCCGAGCCATGAGCTTAGCTCATC 60 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| | || Sbjct 82 TAAATCAAAAGTCGAGATCGATGGCGTCCTTCGCTCGCCGTGCCATGAGCTTAG--C-TC 138 Query 61 AGATCCCATCTGCTCGTGTTTCCGCTGGAGCTTCTTCTATTGGTCAGCGTCGTTGTCTCG 120 ||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| |||| Sbjct 139 AGATCCCATCTGCTCGTATTTCCTCTGGAGCCGCTTCTATTGGTCAGCGTCGTTGCCTCG 198 Query 121 CCGGCGCCGCTGATCACCATGGATCTACCAAGGTTGACTTCTGGAAACAGCCCACGAACC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 199 CCGGCGCCGCTGATCACCATGGATCTACCAAGGTTGACTTCTGGAAACAGCCCACGAACC 258 Query 181 CAGGAAACTGGAAAGAGGAGCATT 204 |||||||||||||||||||||||| Sbjct 259 CAGGAAACTGGAAAGAGGAGCATT 282 Score = 122 bits (66), Expect = 1e-27 Identities = 75/79 (95%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 248 TGGATACAAGCTCGCCACCGGGGGaaaaaaaGAGGA-GCCTGTAGAGAGTACACAATGAG 306 |||||||||||||||||| |||||||||||||| || |||||| |||||||||||||||| Sbjct 282 TGGATACAAGCTCGCCACTGGGGGAAAAAAAGA-GACGCCTGTGGAGAGTACACAATGAG 340 Query 307 TTTCATTGTCACCAGGAAG 325 ||||||||||||||||||| Sbjct 341 TTTCATTGTCACCAGGAAG 359 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15130592449 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5