BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931968

Length=325
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G20820.2 | Symbols:  | unknown protein; Has 36 Blast hits to...   318    2e-86


> AT2G20820.2 | Symbols:  | unknown protein; Has 36 Blast hits 
to 36 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:8964349-8965424 FORWARD 
LENGTH=597
Length=597

 Score =  318 bits (172),  Expect = 2e-86
 Identities = 194/204 (95%), Gaps = 3/204 (1%)
 Strand=Plus/Plus

Query  1    TAAATCAGAAGTCGAGATCGATGGCGTCCTTCGCTCGCCGAGCCATGAGCTTAGCTCATC  60
            ||||||| |||||||||||||||||||||||||||||||| |||||||||||||  | ||
Sbjct  82   TAAATCAAAAGTCGAGATCGATGGCGTCCTTCGCTCGCCGTGCCATGAGCTTAG--C-TC  138

Query  61   AGATCCCATCTGCTCGTGTTTCCGCTGGAGCTTCTTCTATTGGTCAGCGTCGTTGTCTCG  120
            ||||||||||||||||| ||||| |||||||  |||||||||||||||||||||| ||||
Sbjct  139  AGATCCCATCTGCTCGTATTTCCTCTGGAGCCGCTTCTATTGGTCAGCGTCGTTGCCTCG  198

Query  121  CCGGCGCCGCTGATCACCATGGATCTACCAAGGTTGACTTCTGGAAACAGCCCACGAACC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  199  CCGGCGCCGCTGATCACCATGGATCTACCAAGGTTGACTTCTGGAAACAGCCCACGAACC  258

Query  181  CAGGAAACTGGAAAGAGGAGCATT  204
            ||||||||||||||||||||||||
Sbjct  259  CAGGAAACTGGAAAGAGGAGCATT  282


 Score =  122 bits (66),  Expect = 1e-27
 Identities = 75/79 (95%), Gaps = 2/79 (3%)
 Strand=Plus/Plus

Query  248  TGGATACAAGCTCGCCACCGGGGGaaaaaaaGAGGA-GCCTGTAGAGAGTACACAATGAG  306
            |||||||||||||||||| |||||||||||||| || |||||| ||||||||||||||||
Sbjct  282  TGGATACAAGCTCGCCACTGGGGGAAAAAAAGA-GACGCCTGTGGAGAGTACACAATGAG  340

Query  307  TTTCATTGTCACCAGGAAG  325
            |||||||||||||||||||
Sbjct  341  TTTCATTGTCACCAGGAAG  359



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15130592449


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5