BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg931982 Length=947 Score E Sequences producing significant alignments: (Bits) Value AT2G20890.1 | Symbols: PSB29, THF1 | photosystem II reaction ce... 1452 0.0 > AT2G20890.1 | Symbols: PSB29, THF1 | photosystem II reaction center PSB29 protein | chr2:8987666-8989416 FORWARD LENGTH=1251 Length=1251 Score = 1452 bits (786), Expect = 0.0 Identities = 896/950 (94%), Gaps = 4/950 (0%) Strand=Plus/Plus Query 1 CTCTTTCTCTCTTCAGTTTCGCAATGGCTGCAACTGCAATCTCTTCCCTTTCCTTACCAG 60 ||||||||| ||||| ||| || ||||||||||||||||||||||| |||||||| |||| Sbjct 95 CTCTTTCTCACTTCAATTTAGCGATGGCTGCAACTGCAATCTCTTCTCTTTCCTTCCCAG 154 Query 61 CGTTGGGTCAATCGGACAAGATCTCCAATTTCGCACCTTCTCGTCCTCTCGCCTCCACAA 120 | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 155 CTTTGGGTCAATCGGACAAGATCTCCAATTTCGCATCTTCTCGTCCTCTCGCCTCCGCAA 214 Query 121 TTCGCATCTGCACCAAGTCTTCTCGCCACTCTTTGACTTCGCGTTCCACTTCGAGATCTC 180 ||||||||||||| |||| |||||||| ||||||| ||||||||||||||||| ||||| Sbjct 215 TTCGCATCTGCACAAAGTTTTCTCGCCTTTCTTTGAATTCGCGTTCCACTTCGAAATCTC 274 Query 181 TTATTCACTGCATGTCCACTGTTA---CCGATGTGCCTCCTGTATCAGAGACAAAGTCGA 237 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 275 TTATTCACTGCATGTCCAATGTTACCGCCGATGTGCCTCCTGTATCAGAGACAAAGTCGA 334 Query 238 ATTTCCTAAAAGCTTACAAGCGACCTATCCCGAGTATCTACAACACGGTTTTGCAGGAGC 297 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 335 AATTCCTAAAAGCTTACAAGCGACCCATCCCGAGTATCTACAACACGGTTTTGCAGGAGC 394 Query 298 TCATTGTACAGCAGCATTTGATGAGGTATAAGAAGACTTATCGTTACGATCCTGTTTTTG 357 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 395 TCATTGTCCAGCAGCATTTGATGAGGTATAAGAAGACTTATCGTTATGATCCTGTTTTTG 454 Query 358 CACTTGGCTTTGTCACTGTGTATGATCAGCTCATGGAAGGATATCCGAGCGATCAAGATC 417 | ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| | Sbjct 455 CCCTTGGATTTGTCACTGTATATGATCAGCTCATGGAAGGATATCCGAGTGATCAAGACC 514 Query 418 GAGATGCCATTTTTAAAGCTTACATAGAAGCCTTGAATGAGGATCCTAAACAATACCGAA 477 |||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| Sbjct 515 GAGATGCCATTTTTAAGGCTTACATTGAAGCCTTGAATGAGGATCCTAAGCAATACCGAA 574 Query 478 TTGATGCTCAGAAGATGGAGGAATGGGCAAGAAGTCAGACTTCTGCTTCACTAGTTGACT 537 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 575 TTGATGCTCAGAAGATGGAGGAATGGGCACGAAGTCAGACTTCTGCTTCACTAGTTGACT 634 Query 538 TTTCCTCTAGAGAAGGAGAAATTGAAGCACTTCTTAAGGACATTGCAGGAAGAGCTGGGA 597 ||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| | Sbjct 635 TTTCCTCTAAAGAAGGAGATATTGAAGCAGTTCTTAAGGACATTGCAGGAAGAGCTGGTA 694 Query 598 GTAAGGAGGGATTTAGTTACAGTAGGTTCTTCGCCGTTGGGCTCTTTCGTTTACTTGAGC 657 |||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||| Sbjct 695 GTAAGGAGGGGTTTAGTTACAGCAGGTTCTTCGCTGTTGGGCTCTTTCGTTTGCTTGAGC 754 Query 658 TTGCAAGTGCTACTGATCCAACTGTCTTGGACAAGCTTTGTGCATCCCTAAATATCAACA 717 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 755 TTGCAAGTGCTACTGATCCAACTGTCTTGGACAAGCTTTGTGCATCCCTAAATATCAACA 814 Query 718 AGAAAAGCGTGGATCGGGACCTGGATGTGTATCGTAACCTGCTGTCAAAGCTTGTCCAAG 777 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 815 AGAAAAGCGTGGATCGGGACCTGGATGTGTATCGTAACCTGCTTTCAAAGCTTGTCCAAG 874 Query 778 CCAAGGAATTGCTTAGGGAGTATGTCGAGAGGGAGAAGAAGAAGCAAGGGGAGAGAGCCG 837 ||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||| Sbjct 875 CCAAGGAATTGCTTAAGGAGTATGTCGAGAGGGAGAAGAAGAAGCAAGGAGAAAGAGCCC 934 Query 838 AATCCCAGAAGGCTAATGAAACAATCTCCAAGTGTCTTGGAGATACTCTATATAACCCAT 897 |||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 935 AATCTCAGAAGGCTAACGAAACAATCTCCAAGTGTCTGGGAGATACTCTATATAACCCAT 994 Query 898 CTTTCTTGGTTGAATGGAAATAGTAAAAAATCAATTGTGACtt-tttttt 946 |||||||||||||| |||||| || ||||||| ||||||||| |||||| Sbjct 995 CTTTCTTGGTTGAACGGAAATCTTAGAAAATCATTTGTGACTTCTTTTTT 1044 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46315883534 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5