BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932055
Length=1094
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21280.1 | Symbols: GC1, ATSULA, SULA | NAD(P)-binding Rossm... 1703 0.0
> AT2G21280.1 | Symbols: GC1, ATSULA, SULA | NAD(P)-binding Rossmann-fold
superfamily protein | chr2:9110313-9112707 REVERSE
LENGTH=1261
Length=1261
Score = 1703 bits (922), Expect = 0.0
Identities = 1038/1093 (95%), Gaps = 11/1093 (1%)
Strand=Plus/Plus
Query 1 CGATCAGTTTCAGCGAAAGGATGGAGAttctctgctcaacaacgtctctttcctcctcct 60
|||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||
Sbjct 9 CGATCAGTTTCAGCGAAACGATGGAGCTTCTCTGCTCACCAACGTCTCTTTCCTCCTCCT 68
Query 61 tcgctctctcttctgctcttttcgtccctccATCAATC-CCTGTGCCAGGGACAAGGAGA 119
|||||||||||||||||||||| ||||||| || || || |||||||||||||||||
Sbjct 69 TCGCTCTCTCTTCTGCTCTTTTAGTCCCTCGTTCGTTCTCC-ATGCCAGGGACAAGGAGA 127
Query 120 TTCATGGTTCTGTGTAGTTCCGAGAAATCCCAGAAGGAAAATCAGATGACAGTGTCAGTA 179
||||||||||||||||| | ||||||||||||| |||||||||||||||||||
Sbjct 128 TTCATGGTTCTGTGTAG-T--------TCCCAGAAGGAAAGTCAGATGACAGTGTCAGTA 178
Query 180 ACTGGAGCAACTGGATTCATTGGGAGAAAATTGGTTAAGAGACTTCGTGCTGATAATCAC 239
|||||||||||||||||||| |||||| ||||||| ||||||||||||||||||| |||
Sbjct 179 ACTGGAGCAACTGGATTCATAGGGAGACGATTGGTTCAGAGACTTCGTGCTGATAACCAC 238
Query 240 TCTATCCGGGTCTTAACACGCTCGAAATCCAAAGCTGACCAAATATTTCCTGCCAAGGAC 299
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 239 GCTATCCGGGTCTTAACACGCTCTAAATCCAAAGCTGAGCAAATATTTCCTGCCAAGGAC 298
Query 300 TTCCCAGGTATTGTGATTGCAGAAGAATCGGAGTGGAAGAACTGTGTACAAGGCTCCACT 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 299 TTCCCAGGTATTGTGATTGCAGAAGAATCGGAGTGGAAGAACTGTGTACAAGGCTCTACT 358
Query 360 GCTGTTGTGAACTTGGCAGGATTGCCTATTAGTACAAGGTGGTCTCCCGAGATCAAGAAA 419
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 359 GCTGTTGTGAACTTGGCAGGACTGCCTATTAGTACAAGGTGGTCTCCCGAGATCAAGAAA 418
Query 420 GAGATTAAAGACAGCCGGATCCGTGTCACCTCCAAAGTTGTTGACTTAATCAATAATTCA 479
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GAGATTAAGGGCAGCCGGATCCGTGTCACCTCCAAAGTTGTTGACTTAATCAATAATTCA 478
Query 480 CCAGCAGAAGCCAGGCCTACCATTCTAGTTAGCGCCACGGCTGTTGGTTACTACGGTACT 539
||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 479 CCAGCAGAAGCTAGGCCTACCGTTCTAGTTAGCGCCACGGCTGTTGGTTACTATGGTACT 538
Query 540 AGTGAGACAGGAGTATTCGACGAAAATAGTCCATCAGGGAAGGATTATCTTGCTGAGGTT 599
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 539 AGTGAGACAGGAGTATTCGACGAAAATAGTCCATCAGGGAAGGACTATCTTGCAGAGGTT 598
Query 600 TGCAGAGAATGGGAAGGAACTGCATTGAAAGCGAATAAAGATGTTAGAGTGGCACTTATC 659
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 599 TGCAGAGAATGGGAAGGAACTGCATTGAAAGCAAATAAGGATGTTAGAGTGGCACTTATC 658
Query 660 CGCATCGGTATTGTTCTTGGCAAAGACGGTGGAGCTTTGGCCATGATGATACCCTTTTTC 719
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CGCATTGGTGTTGTTCTTGGCAAAGACGGTGGAGCTTTGGCCATGATGATACCCTTTTTC 718
Query 720 CAAATGTTTGCTGGAGGACCTCTGGGTTCAGGACAACAATGGTTCTCTTGGATTCACGTG 779
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 719 CAAATGTTTGCTGGAGGACCTCTGGGTTCCGGACAACAATGGTTCTCTTGGATTCACGTG 778
Query 780 GATGACTTGGTGAACTTAATTTACGAGGCCCTCACTAATCCATCCTATCAAGGAGTTATT 839
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 779 GATGACTTGGTGAACTTAATTTACGAGGCCCTCACTAATCCATCTTATAAAGGAGTTATT 838
Query 840 AATGGGACTGCGCCGAATCCGGTTAGGCTTGGGGAAATGTGCCAGCAGCTAGGCAGCGTT 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 839 AATGGGACTGCGCCGAATCCGGTTAGGCTTGGGGAAATGTGCCAGCAGCTAGGCAGTGTT 898
Query 900 CTTAGCCGACCATCATGGCTACCAGTTCCTGACTTTGCACTCAAAGCTTTACTTGGAGAA 959
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 899 CTTAGCCGACCATCGTGGCTACCAGTTCCTGACTTTGCACTCAAAGCTTTGCTCGGAGAA 958
Query 960 GGTGCCACTGTGGTTCTGGAGGGACAGAAGGTTTTACCTGTAAGAGCCAAAGAGCTTGGT 1019
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 959 GGTGCCACTGTAGTTCTGGAGGGACAGAAGGTATTACCTGTAAGAGCCAAAGAGCTTGGT 1018
Query 1020 TTTGAATTCAAATACAAATACGTGAAGGATGCACTCAGAGCCATTATGCAATAAGGTGAC 1079
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TTTGAATTCAAGTATAAATACGTGAAGGATGCACTCAGAGCCATTATGCAATAAGGTGAC 1078
Query 1080 ACACATGACCATC 1092
|||||| | ||||
Sbjct 1079 ACACATAAGCATC 1091
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53614182060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5