BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg932059 Length=551 Score E Sequences producing significant alignments: (Bits) Value AT2G21320.1 | Symbols: | B-box zinc finger family protein | ch... 846 0.0 AT4G38960.3 | Symbols: | B-box type zinc finger family protein... 294 5e-79 > AT2G21320.1 | Symbols: | B-box zinc finger family protein | chr2:9126263-9127843 FORWARD LENGTH=949 Length=949 Score = 846 bits (458), Expect = 0.0 Identities = 497/516 (96%), Gaps = 1/516 (0%) Strand=Plus/Plus Query 2 TAATCGTTTGAGT-AAAAACATGCGAATTTTGTGTGATGCTTGTGAGAGCGCCGCCGCTA 60 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 220 TAATCGTTTGAGTAAAAAACATGCGAATTTTGTGTGATGCTTGTGAGAGCGCCGCCGCTA 279 Query 61 TCGTCTTTTGCGCCGCCGACGAAGCTGCCCTCTGTTGCTCCTGCGACGAAAAAGTTCACA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 280 TCGTCTTTTGCGCCGCCGACGAAGCTGCCCTCTGTTGCTCCTGCGACGAAAAAGTTCATA 339 Query 121 AGTGCAACAAGCTGGCTAGTCGGCATCTTCGTGTAGGCTTAGCTGATCCGAGTAATGCGC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 340 AGTGCAACAAGCTGGCTAGTCGGCATCTTCGTGTAGGCTTAGCTGATCCGAGTAATGCAC 399 Query 181 CAAGCTGTGACATATGCGAAAATGCACCCGCATTCTTTTACTGTGAGATAGATGGTAGTT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 400 CAAGCTGTGACATATGCGAAAATGCACCCGCATTCTTTTACTGTGAGATAGATGGTAGTT 459 Query 241 CCCTTTGTCTTCAATGTGACATGGTAGTACATGTTGGTGGGAAGAGAACACACAAGCGGT 300 |||||||||| |||||||| ||||| |||||||||||||||||||||||||| | ||||| Sbjct 460 CCCTTTGTCTACAATGTGATATGGTGGTACATGTTGGTGGGAAGAGAACACATAGGCGGT 519 Query 301 TTCTGTTGCTGAGACAGAGAATTGAGTTTCCAGGCGATAAGCCTAATCATGCCGACCAAC 360 |||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 520 TTCTATTACTGAGACAGAGAATTGAGTTTCCAGGCGATAAGCCTAATCATGCTGACCAAC 579 Query 361 TGGGATTACGGTGTCAAAAGGTTTCCTCTGGTCGCGGTCAAGAATCAAATGGAAATGGTG 420 ||||| ||||||||||||||| |||||||||||| ||||||||||||||||| ||||||| Sbjct 580 TGGGACTACGGTGTCAAAAGGCTTCCTCTGGTCGTGGTCAAGAATCAAATGGGAATGGTG 639 Query 421 ATCATGATCATAATATGATCGATCTTAACTCCAATCCTCAGAGAGTTCACGAGCCTGGAT 480 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 640 ATCATGATCATAATATGATCGATCTTAACTCCAATCCTCAAAGAGTACACGAGCCTGGAT 699 Query 481 CAAATCACCAAGAGGAGGGTATTGATGTAAATAACG 516 || || |||||||||||||||||||||||||||||| Sbjct 700 CACATAACCAAGAGGAGGGTATTGATGTAAATAACG 735 > AT4G38960.3 | Symbols: | B-box type zinc finger family protein | chr4:18161088-18163321 FORWARD LENGTH=1445 Length=1445 Score = 294 bits (159), Expect = 5e-79 Identities = 210/235 (89%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 113 AGTTCACAAGTGCAACAAGCTGGCTAGTCGGCATCTTCGTGTAGGCTTAGCTGATCCGAG 172 |||||| | |||||||||||| |||||||||||| | ||||| || |||||||| || || Sbjct 710 AGTTCATATGTGCAACAAGCTAGCTAGTCGGCATGTACGTGTTGGTTTAGCTGAACCAAG 769 Query 173 TAATGCGCCAAGCTGTGACATATGCGAAAATGCACCCGCATTCTTTTACTGTGAGATAGA 232 ||||| ||| ||||||| ||||||||||||||||| || |||||||||||||||||||| Sbjct 770 CAATGCCCCATGCTGTGATATATGCGAAAATGCACCTGCCTTCTTTTACTGTGAGATAGA 829 Query 233 TGGTAGTTCCCTTTGTCTTCAATGTGACATGGTAGTACATGTTGGTGGGAAGAGAACACA 292 |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 830 CGGTAGTTCTCTTTGTCTGCAATGTGACATGGTAGTACATGTTGGTGGCAAGAGAACACA 889 Query 293 CAAG-CGGTTTCTGTTGCTGAGACAGAGAATTGAGTTTCCAGGCGATAAGCCTAA 346 | | |||||||| ||||||||||||||||| ||||||||||| ||||||||||| Sbjct 890 CG-GTCGGTTTCTTTTGCTGAGACAGAGAATCGAGTTTCCAGGGGATAAGCCTAA 943 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26423161322 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5