BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932068
Length=1033
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21385.4 | Symbols: | unknown protein. | chr2:9149639-91519... 1035 0.0
> AT2G21385.4 | Symbols: | unknown protein. | chr2:9149639-9151913
FORWARD LENGTH=1370
Length=1370
Score = 1035 bits (560), Expect = 0.0
Identities = 618/646 (96%), Gaps = 3/646 (0%)
Strand=Plus/Plus
Query 2 GTGCGGTGCCTTCACTATAATGGCGGCAATATCCTCTGTTCAATGCTTATTCTCTTGCAA 61
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 69 GTGCGGTGCCTTCACTTTAATGGCGGCAATATCCCCTGTTCAATGCTTATTCTCTTGCAA 128
Query 62 TTCTCATCATCATCAT---CAACGCGACCAGAGTGGGTCGCTTTGGAGATTGGGTTCTAG 118
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 129 TTCTCATCATCATCATCAACAACGCGAGCAGAGTGGGTCGCTTTGGAGATTGGGTTCTAG 188
Query 119 GGTTTTAGTATCTTCGAATCTATGGAAGCTTTCTCTGTTCTCTGGATTCAATTTGAAGCG 178
||||||||||||||||| |||||||||||||||||||||||||||| || ||||||| ||
Sbjct 189 GGTTTTAGTATCTTCGAGTCTATGGAAGCTTTCTCTGTTCTCTGGACTCCATTTGAACCG 248
Query 179 AAGGAGAACTTTGATCTGTGCAGTCAAGGGAGATCCAGAAGAAGCGTTTAAGAAGACTGT 238
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 249 AAGGAGAACTTTGATCTGTGCAGTCAAGGGAGATCCAGAAGATGCCTTTAAGAAGACTGT 308
Query 239 CGAAATCGATAGGATGATTGATGCTCTTAGAGATGCAAACCCTAGACAAGTTGAGAAGAT 298
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 CGAAATCGATCGGATGATTGATGCTCTTAGAGATGCAAACCCTAGACAAGTTGAGAAGAT 368
Query 299 TGTTGTTGAAAATATCCTTGCTTTTGATGAGGTTTTTTGGATTAGACTTGCAGCTAGGTC 358
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 369 TGTTGTTGAAAATATCCTTGCTTTTGATGAGGTTTTTTGGATAAGACTAGCAGCTAGGTC 428
Query 359 AGATACTTGCAAATCAGAAGATGATAAGAAGGACTATGAGGAGTTAGCTACAACCGTAAT 418
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 429 GGATACTTGTAAATCAGAAGATGACAAGAAGGACTATGAGGAGTTAGCTACAACTGTGAT 488
Query 419 GACTATAGTTGACTGCGTTGTGAATAAGACTCGGGAGAAGATAGAAACGTCTACTGATAT 478
||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 489 GACTATAGTTGACTGTGTTGTGAATAAGACTCGGGAAAAGATAGAGACGTCTACTGATAT 548
Query 479 TCTGAAAGGGATTTTAAGACCGGCTATAGATGGAGTGGAAGAGATTTCATGGCCTCCAAG 538
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 549 TCTGAAAGGGATTTTAAGACCTGCTATAGATGGAGTGGAAGAGATTTCATGGCCGCCAAG 608
Query 539 AGATCCTGAAGCCATCAATCTAATGGAAAAGGAAATAATACAACGGGAAAAAGAAGGGCA 598
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 609 AGATCCTGAAGCCATCAATCTAATGAAAAAGGAAATTATACAACGGGAAAAAGAAGGGCA 668
Query 599 ATTAGATGAAGGATTTCTTTCAGAAGTTAGTGCTCAGCTCCGGCAG 644
||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 669 ATTAGATGAAGGATTTCTTTCAGAAGTTAATGCTCAGCTCCGGCAG 714
Score = 462 bits (250), Expect = 2e-129
Identities = 275/287 (96%), Gaps = 2/287 (1%)
Strand=Plus/Plus
Query 746 AGGGAACGAAATTGTTAAAGCCGAGCATTTTCTCGAAACTCTGATTAAAGCTCCTGAGGA 805
|||||||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 945 AGGGAACGAAGTTGTAAAAGCCGAGCATTTTCTTGAAACTCTGATCAAAGCTCCTGAGGA 1004
Query 806 ACAATGGAACAAGCTTTTCGTAGACGGGTTAACAATCGGGAAAGGAGATATCACACCTGA 865
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1005 ACAATGGAACAAGCTTTTCGTAGACGGGTTAACAATCGGAAAAGGAGATATCACACCTGA 1064
Query 866 TGAGCTATCTGCTGTTATCAAGAAACGAATCGAGCGCACACTGATTCGAACTGAAGGTGG 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1065 TGAGCTATCTGCTGTTATCAAGAAACGAATCGAGCGCACACTGATTCGAACTGAAGGGGG 1124
Query 926 TTCATACCAGCAACGAATCTTGACCGAGTATCTCAAAGGAATCGAGTCCAGGGCTAATGA 985
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TTCATACCAGCAGCGAATTTTGACCGAGTATCTCAAAGGAATCGAGTCCAGGGCTAATGA 1184
Query 986 AATTATGAAATTACTTCAGGGTTAAT-TCTGTAAATCATGGATTTAT 1031
||||||||||||||| |||||||||| || |||||||||| ||||||
Sbjct 1185 AATTATGAAATTACTCCAGGGTTAATGTC-GTAAATCATGTATTTAT 1230
Score = 198 bits (107), Expect = 8e-50
Identities = 107/107 (100%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 642 CAGGCAAAAGAAGATAAAGACAAACCAGGGTTATTGGCTATGCTGCAAAAAGTTCTTCAA 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 CAGGCAAAAGAAGATAAAGACAAACCAGGGTTATTGGCTATGCTGCAAAAAGTTCTTCAA 812
Query 702 CTCTATTCTGCTACTATCCTCTCCAAGCGTAGCTACGCAAAGAAAGG 748
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 CTCTATTCTGCTACTATCCTCTCCAAGCGTAGCTACGCAAAGAAAGG 859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50636020176
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5