BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg932140 Length=1049 Score E Sequences producing significant alignments: (Bits) Value AT2G21960.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 1679 0.0 > AT2G21960.1 | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56180.1); Has 224 Blast hits to 222 proteins in 59 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | chr2:9354842-9357091 FORWARD LENGTH=1280 Length=1280 Score = 1679 bits (909), Expect = 0.0 Identities = 1005/1051 (96%), Gaps = 7/1051 (1%) Strand=Plus/Plus Query 2 TTTTCTTGAGAA--TTTTTTGAAGAAG-TATGATTGCATTAACTGTTTCTTCGTTGGGGA 58 |||||||||||| |||||||||| || ||||||||||||| ||| |||||||||||||| Sbjct 121 TTTTCTTGAGAACTTTTTTTGAAG-AGTTATGATTGCATTAGCTGCTTCTTCGTTGGGGA 179 Query 59 ATACTCCGATTGCTACGTTTAACCGGCGTTTCAGATTCCGGTTACATCCACGAAACCCTC 118 |||| ||||||||| |||||||||| | ||| |||||||||||||||||||||||||||| Sbjct 180 ATACACCGATTGCTTCGTTTAACCGTCATTTTAGATTCCGGTTACATCCACGAAACCCTC 239 Query 119 CGATACAAGCAGCGGTTTCTCCTTCTTCATCCTCTTCTTCTTCTCCTACTGCTGCATCTG 178 |||||||||||||||||| ||||| || | ||||||||||||||||||||| |||||| Sbjct 240 TGATACAAGCAGCGGTTTCACCTTCGTC-T--TCTTCTTCTTCTCCTACTGCTTCATCTG 296 Query 179 GGTTTGATTTGAGTTCTCTCGAATCCGCCATTAACAAGAAAGATAGTAATGGTGTTAAGG 238 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 GCTTTGATTTGAGTTCTCTCGAATCCGCCATTAACAAGAAAGATAGTAATGGTGTTAAGG 356 Query 239 AAGCTCTAGATAAATTGAATGAACAAGGTTGGGCTAAGAAATGGAGTTCCCAGCCGTATC 298 ||||||| |||||||||| |||| |||||||||||||||||||||| ||||||||||||| Sbjct 357 AAGCTCTCGATAAATTGAGTGAAGAAGGTTGGGCTAAGAAATGGAGCTCCCAGCCGTATC 416 Query 299 TTTCGCGCCGTACGACATCGCTTCGGGAGCTGACAACTCTCGGAATCAAGAATGCAGAGA 358 ||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||| Sbjct 417 TTTCGCGCCGTACGACATCACTGCGGGAGCTGACAACTCTCGGTATCAAGAATGCAGAGA 476 Query 359 CTCTTGCCATCCCTAGTGTCAGGAACGATGCGGCTTTTCTTTTCACGGTAGTCGGAACAA 418 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 477 CTCTGGCCATCCCTAGTGTCAGGAACGATGCGGCTTTTCTTTTCACAGTAGTCGGATCAA 536 Query 419 CCGGGTTCATAGCTGTACTTGCCGGCCAACTTCCCGGGGACTGGGGATTCTTTGTGCCTT 478 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 CTGGGTTCATAGCTGTACTTGCCGGCCAACTTCCCGGGGACTGGGGATTCTTTGTGCCTT 596 Query 479 ACTTAGTTGGGAGCATTTCGTTGGTAGTTTTAGCTGTGGGAAGCGTTTCACCAGGGCTTC 538 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 597 ACTTAGTTGGGAGCATTTCGTTGGTAGTTTTAGCCGTGGGAAGCGTTTCACCAGGGCTTC 656 Query 539 TTCAAGCTGCGATTTCCGGGTTTTCTACGTTCTTCCCTGATTATCAAGAAAGAATTGCTG 598 ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 657 TTCAAGCTGCGATTTCCGGGTTTTCGACGTTCTTCCCTGATTATCAAGAACGAATTGCTG 716 Query 599 CACATGAAGCAGCCCACTTCTTAGTGGCTTACTTAATCGGACTTCCAATCCTCGGGTACT 658 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 717 CACATGAAGCAGCCCACTTCTTAGTGGCTTACTTAATCGGGCTTCCAATCCTCGGGTACT 776 Query 659 CCTTAGACATCGGTAAAGAACACGTCAATCTCATCGACGAGAGACTAGCTAAACTAATAT 718 | |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 777 CGTTAGACATCGGTAAAGAACATGTCAATCTCATTGACGAGAGACTAGCTAAACTAATAT 836 Query 719 ACAGCGGCAAGCTTGACTCAAAGGAGCTCGATAGGTTGGCTGCTGTTGCAATGGCTGGAC 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 ACAGCGGCAAGCTTGACTCAAAGGAGCTCGATAGGTTGGCTGCTGTTGCAATGGCTGGAC 896 Query 779 TTGCCGCCGAGGGTCTGAAGTATGACAAAGTGATCGGCCAATCTGCAGATCTCTTCTCTC 838 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 897 TTGCCGCCGAGGGTCTGAAGTATGACAAAGTAATTGGCCAATCTGCAGATCTCTTCTCTC 956 Query 839 TTCAGAGATTCATAAACAGAAGCCAACCCAAAATCAGCAACGAGCAGCAGCAAAATCTAA 898 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 957 TTCAGAGATTCATAAACAGAAGCCAACCCAAAATCAGCAACGAGCAGCAGCAAAATCTAA 1016 Query 899 CAAGATGGGCTGTTCTCTACTCTGCTTCTCTTCTCAAAAACAACAAGAACATCCATGAAG 958 |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1017 CAAGATGGGCTGTTCTTTACTCTGCTTCTCTTCTCAAAAACAACAAGACCATCCATGAAG 1076 Query 959 CTCTAATGGCTGCAATGTCCAAAAATGCAACTGTTCTTGAATGCATTCAAACCATCGAGA 1018 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 1077 CTCTAATGGCTGCAATGTCCAAAAATGCATCTGTTCTTGAATGCATTCAAACCATTGAGA 1136 Query 1019 CAGCTTCCTAGATAAACAATCTCGGTTCTCT 1049 ||||||||||||| ||||||||| ||| ||| Sbjct 1137 CAGCTTCCTAGATGAACAATCTCTGTTATCT 1167 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51439766528 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5