BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932181
Length=593
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22170.1 | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family... 1011 0.0
AT4G39730.1 | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family... 416 1e-115
> AT2G22170.1 | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family
protein | chr2:9426849-9427817 REVERSE LENGTH=788
Length=788
Score = 1011 bits (547), Expect = 0.0
Identities = 573/586 (98%), Gaps = 0/586 (0%)
Strand=Plus/Plus
Query 6 TACATCCATATCACCGATGATGCCTCGCCGTGACGTTCTCTTCCTCTCCCTCCTCCTCGT 65
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 60 TACATCCATATCACCGATGATGCCTCGCCGTGACGTCCTCTTCCTCTCACTCCTCCTCGT 119
Query 66 CATCGCCACCGTCTCCGCCGTCGCATTCGCCGACGATGAAGCAGATTGTGTCTACACATT 125
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 CATCGCCACCGTCTCCGCTGTCGCATTAGCCGACGATGAAGCAGATTGTGTCTACACATT 179
Query 126 CTACCTTAGAACCGGATCAATCTTCAAAGCCGGTACAGATTCGATCATAAGCGCTAGAGT 185
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTTCCTTAGAACCGGATCAACCTTCAAAGCCGGTACAGATTCGATCATAAGCGCTAGAGT 239
Query 186 CTACGACAAATACGGAGACTACATCGGGATCCGAAACCTAGAAGCATGGGGTGGTTTAAT 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTACGACAAATACGGAGACTACATCGGGATCCGAAACCTAGAAGCATGGGGTGGTTTAAT 299
Query 246 GGGACCAGGTTACAACTACTACGAGAGGGGTAATCTCGACATTTTCAGTGGGAAAGCACC 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGGACCAGGTTACAACTACTACGAGAGGGGTAATCTCGACATTTTCAGTGGGAAAGCACC 359
Query 306 GTGTCTTCCGAGCCCAGTCTGTTCATTGAATCTGACCTCTGACGGCTCCGGTGACCACCA 365
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 ATGTCTTCCGAGCCCAGTCTGTTCATTAAATCTGACCTCTGACGGCTCCGGTGACCACCA 419
Query 366 CGGTTGGTATGTTAACTACGTGGAAGTCACGACAGCCGGAGTTCATGCAAAGTGCTCGTA 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGGTTGGTATGTTAACTACGTGGAAGTCACGACAGCCGGAGTTCATGCAAAGTGCTCGTA 479
Query 426 CCAAAGCTTCGATGTTGAGCAATGGCTTGCCTCCGATACATCGCCGTATGAGCTCAGTAC 485
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 480 CCAAAGCTTTGATGTTGAGCAATGGCTTGCGTCCGATACATCGCCGTATGAGCTCAGTGC 539
Query 486 TGTTCGGAATAACTGTCCGGTTTCGCTTAGGGAAAGTGTCGGTCGGGTCGGGTCTGAGAT 545
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGTTCGGAATAACTGTCCAGTTTCGCTTAGGGAAAGTGTCGGTCGGGTCGGGTCTGAGAT 599
Query 546 CCGGAAGACTCTCTCTTGGATCGTGTGAGATTAGTGAATGAAATGT 591
|||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 600 CCGGAAGACTCTCTCTTGGATCGTGTGAGAGTAGTGAATGAAATGT 645
> AT4G39730.1 | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family
protein | chr4:18432899-18433695 FORWARD LENGTH=711
Length=711
Score = 416 bits (225), Expect = 1e-115
Identities = 448/554 (81%), Gaps = 21/554 (4%)
Strand=Plus/Plus
Query 25 ATGCCTCGCCGTGACGTTCT-CTTCCTCTCCCTCCTCCTCGTCATCGCCACCGTCTCCGC 83
||| |||| || || ||||| || ||| | ||||||||| || ||||||||||||||||
Sbjct 52 ATGGCTCGTCGCGATGTTCTCCTCCCT-TTCCTCCTCCT--TC-TCGCCACCGTCTCCGC 107
Query 84 CGTCGCATTCGCCGACGATGAAGCAGATTGTGTCTACACATTCTACCTTAGAACCGGATC 143
||| || |||||||| ||||| |||| ||||| |||||||||||||| |||||||||||
Sbjct 108 CGTAGCTTTCGCCGAAGATGATCCAGACTGTGTATACACATTCTACCTCAGAACCGGATC 167
Query 144 AATCTTCAAAGCCGGTACAGATTCGATCATAAGCGCTAGAGTCTACGACAAATACGGAGA 203
|||| |||||||| || ||||||||||| ||||| ||| ||||||| || |||| ||
Sbjct 168 GATCTGGAAAGCCGGAACCGATTCGATCATCAGCGCAAGAATCTACGATAAGGACGGTGA 227
Query 204 CTACATCGGGATCCGAAACCTAGAAGCATGGGGTGGTTTAATGGGACCAGGTTACAACTA 263
||||||||| ||| |||||| |||| |||| ||| ||||||||||| | |||||| ||
Sbjct 228 CTACATCGGAATCAAAAACCTTCAAGCTTGGGCTGGATTAATGGGACCTGATTACAATTA 287
Query 264 CTACGAGAGGGGTAATCTCGACATTTTCAGTGGGAA-AGCACCGTGTCTT-CCGAGCCC- 320
|| |||||||||||||||||||||||||||||| || |||||||||| || || || ||
Sbjct 288 CTTCGAGAGGGGTAATCTCGACATTTTCAGTGG-AAGAGCACCGTGT-TTACCTAGTCCG 345
Query 321 AGTCTGTTCATTGAATCTGACCTCTGACGGCTCCGGTGACCACCACGGTTGGTATGTTAA 380
| ||||| | || || || ||||| || |||||||| || ||||| |||||||| |||||
Sbjct 346 A-TCTGTGCCTTAAACCTAACCTCCGATGGCTCCGGCGATCACCATGGTTGGTACGTTAA 404
Query 381 CTACGTGGA-AGTCACGACAGCCGGAGTTCATGCAAAGTGCTCGTAC-CAA-AGCTTCGA 437
||||| || | ||||||| || || ||||| ||| |||||||| || || | || ||
Sbjct 405 TTACGTTGAGA-TCACGACGGCTGGTGTTCACGCACAGTGCTCG-ACGCAGGATTTT-GA 461
Query 438 TG-TTGAGCAATGGCTTGCCTCC-GATACATCGCCGTATGAGCTCAGTACTGTTCGGAAT 495
| ||||||||||||| || | | ||||| || || |||||||||| | || |||||
Sbjct 462 -GATTGAGCAATGGCTCGC-TACTGATACTTCTCCTTATGAGCTCACCGCCGTACGGAAC 519
Query 496 AACTGTCCGGTTTCGCTTAGGGAAAGTGTCGGTCGGGTCGGGTCTGAGATCCGGAAGACT 555
|| |||||||| ||||||||| ||||| ||||||||||||||||||| ||||| |
Sbjct 520 AATTGTCCGGTCAAGCTTAGGGATAGTGTTAGTCGGGTCGGGTCTGAGATTCGGAAAAAG 579
Query 556 CTCTCTTGGATCGT 569
|| |||||| ||||
Sbjct 580 CTTTCTTGGGTCGT 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28532995496
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5