BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932367
Length=533
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23690.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 817 0.0
AT4G37240.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 315 4e-85
> AT2G23690.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; EXPRESSED
IN: 7 plant structures; EXPRESSED DURING: petal differentiation
and expansion stage; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G37240.1); Has 243 Blast
hits to 243 proteins in 15 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 241; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink). | chr2:10072233-10073126
FORWARD LENGTH=894
Length=894
Score = 817 bits (442), Expect = 0.0
Identities = 504/534 (94%), Gaps = 3/534 (1%)
Strand=Plus/Plus
Query 1 ATTGAGTCAAACCAAAACCAATGGGTATATGTAGCTCGTACGACTCGACACAAGTCGCGA 60
||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 46 ATTGAGTCAAACC-AAACCAATGGGTATATGCAGCTCGTACGAGTCGACACAAGTCGCAA 104
Query 61 CGGCGAAGCTGATCTTACACGACGGAAGGATGATGGAGTTCACGAGTCCGGTCAAAGTTG 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 105 CGGCGAAGCTGATCTTACACGACGGAAGGATGATGGAGTTCACAAGTCCGGTCAAAGTTG 164
Query 121 GTTATGTGTTACAGAAGAATCCGATGTGTTTCATTTGTAACTCCGATGATATGGACTTTG 180
|||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 165 GTTACGTGTTACAAAAGAATCCGATGTGTTTCATATGTAACTCCGATGATATGGACTTTG 224
Query 181 ACAACGTTGTATCCGCCATTAGCGCCGACGAGGAGTTTCAGCTTGGTCAGCTTTACTTTG 240
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 225 ACAACGTTGTATCCGCCATTAGCGCCGACGAGGAGTTTCAGCTTGGTCAACTGTACTTCG 284
Query 241 CTCTTCCTCTAAGCTCGCTTCATCAGTCTCTTAAAGCCGAGGAAATGGCTGCATTGGCCG 300
|||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 285 CTCTTCCTTTAAGTTCGCTTCATCATTCTCTTAAAGCCGAGGAAATGGCTGCATTGGCTG 344
Query 301 TTAAAGCTAGCTCTGCTCTAATGAGAAGTGGTGGTTCTTGTGGCCGAGATAAATGTAGGT 360
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||
Sbjct 345 TTAAAGCTAGCTCTGCTCTTATGAGAAGTGGTGGTTCATGTGGCCGAGATAAATGTCGGT 404
Query 361 GTCGCCGGAAATGTGTAG-CTCCGGTGATATTTTCTGCTCGGAGAGTAGCGGCGGTGGGA 419
|||| ||||||||||| | |||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 405 GTCGTCGGAAATGTGT-GTCTCCGGTGATCTTTTCTGCTCGAAGAGTGGCGGCGGTGGGA 463
Query 420 TCTAATGGAGAGACGAGGAACGGGAAAAGACGCGGTGGCGGTGGTAGCGGGAGGAGGAAG 479
||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 464 GCTAATGGAGAGACAAGGAATGGGAAAAGACGCGGTGGTGGTGGTAGCGGGAGGAGGAAG 523
Query 480 TATGCGGCGAAGTTGAGTAAGATTGAAGAGTGAAGGGTAGTTTGGTGATTTAGT 533
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 524 TATGCGGCGAAGTTGAGTAAGATAGAAGAATGAAGGGTAGTTTGGTGATTTAGT 577
> AT4G37240.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G23690.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink). | chr4:17524461-17525159 FORWARD
LENGTH=699
Length=699
Score = 315 bits (170), Expect = 4e-85
Identities = 268/316 (85%), Gaps = 4/316 (1%)
Strand=Plus/Plus
Query 21 ATGGGTATATGTAGCTCGTA-CGACTCGACACAAGTCGCGACGGCGAAGCTGATCTTACA 79
||||||||||| |||||| | ||| ||||| |||||||||||||||||||||||||||||
Sbjct 86 ATGGGTATATGCAGCTCG-AGCGAGTCGACTCAAGTCGCGACGGCGAAGCTGATCTTACA 144
Query 80 CGACGGAAGGATGATGGAGTTCACGAGTCCGGTCAAAGTTGGTTATGTGTTACAGAAGAA 139
|| || |||||||||||||| ||| ||| || ||||| || || || || | ||| |
Sbjct 145 AGATGGGAGGATGATGGAGTTTGCGAATCCCGTTAAAGTCGGATACGTTTTGCTCAAGTA 204
Query 140 TCCGATGTGTTTCATTTGTAACTCCGATGATATGGACTTTGACAACGTTGTAT-CCGCCA 198
|||||||||||| || || |||||||| ||||||||||||||| ||| || | |||| |
Sbjct 205 TCCGATGTGTTTTATCTGCAACTCCGACGATATGGACTTTGACGACGCCGT-TGCCGCTA 263
Query 199 TTAGCGCCGACGAGGAGTTTCAGCTTGGTCAGCTTTACTTTGCTCTTCCTCTAAGCTCGC 258
||||||| ||||| ||| |||||||||||||| | ||||||||||||||||| | | ||
Sbjct 264 TTAGCGCTGACGAAGAGCTTCAGCTTGGTCAGATATACTTTGCTCTTCCTCTTTGTTGGC 323
Query 259 TTCATCAGTCTCTTAAAGCCGAGGAAATGGCTGCATTGGCCGTTAAAGCTAGCTCTGCTC 318
||| |||| | |||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 324 TTCGTCAGCCACTTAAAGCTGAGGAGATGGCTGCATTGGCCGTTAAAGCTAGCTCTGCGC 383
Query 319 TAATGAGAAGTGGTGG 334
| |||||| |||||||
Sbjct 384 TCATGAGAGGTGGTGG 399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25518946676
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5