BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932377
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23790.1 | Symbols: | Protein of unknown function (DUF607) ... 1583 0.0
> AT2G23790.1 | Symbols: | Protein of unknown function (DUF607)
| chr2:10125368-10127521 REVERSE LENGTH=1401
Length=1401
Score = 1583 bits (857), Expect = 0.0
Identities = 987/1051 (94%), Gaps = 4/1051 (0%)
Strand=Plus/Plus
Query 5 TTTCTTGGGAGAGCAACAATGGCGATGAGGAAGCTTTTATCGAAGAAACTCTTCAATATC 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 49 TTTCTTGGGAGAGCAACAATGGCGATGAGGAAGCTTTTATCGAAGAAACTCTTCAATATC 108
Query 65 ACGAATGTTGCATCACAGAGTCTTATGAATTGTCGTATATCATCGTCTTCATTAGCCGTA 124
||||||||||| ||||||||||||||||||||||| || || || ||||| |||||||||
Sbjct 109 ACGAATGTTGCTTCACAGAGTCTTATGAATTGTCGCATTTCGTCTTCTTCGTTAGCCGTA 168
Query 125 CGAACCAGAGTTCCGACGGATTCAACAGATACAACCAAAATCTCACCGGAGCCTGGAGAT 184
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 169 CGAACCAGAGTTCCGAATGATTCAACAGATACAACCAAAATCGCACCGGAGCCTGGAGAT 228
Query 185 TCAACGATTTCGCGGCGGTTTATGCACAATAGCGCTATGATTAGG-C--CGGAGATTATG 241
| |||| ||||| |||| ||||| || || |||||||||||| | |||||||||||
Sbjct 229 TTGGCGATGTCGCGAAGGTTCATGCATAACAGTGCTATGATTAGGCCGGCGGAGATTATG 288
Query 242 CAGATGCCGGTTGGAGAGAGTTTGATTGAGAAACTCCGTGAAATCGATGGAAGCAAGGAC 301
||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 289 CAGATGCCGGTGGGAGAGAGTTTGATTGAGAAACTCCGTGAGATTGATGGAAGCAAGGAT 348
Query 302 CGGATTCGATTAGACGGACTTGCTCCGCCGGAGAGGGAGACGAGTTTGACGGTGGCGGAT 361
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 349 CGGATTCGATTAGACGGACTTTCTCCGCCGGAGAGGGAGACGAGTTTGACGGTGGCGGAT 408
Query 362 ACGAAGAAGCTGCTAAGAGCGGCGCAGATCGAGATTGTGAAATCGAAGCTTAGAGAAACC 421
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 409 ACGAAGAAGCTGCTTAGAGCGGCGCAGATCGAGATTGTGAAATCGAAGCTAAGAGAAACG 468
Query 422 GGAAGAAGCTGGATGACGTATTCGGAATTCGTTAGCGTTTGTGGTGAAGCTTCTTCAGAT 481
||||||||||||||| ||||| ||| || ||||||||||||||||||||||||||||||
Sbjct 469 GGAAGAAGCTGGATGCCGTATAAGGAGTTTGTTAGCGTTTGTGGTGAAGCTTCTTCAGAT 528
Query 482 CCAGATCTCGGATCTAGAATCGCGAAGATGCTTGATGATTCAGCAAACGTCATCGTTTTG 541
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 CCAGATCTCGGATCTAAAATCGCGAAGATGCTTGATGATTCAGCAAACGTCATCGTTTTG 588
Query 542 GGAGACTCCGTTTGTATTAGACCTGATCAGGTTACAAAATCCATTGAAGGGTTGCTTCCT 601
||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 589 GGAGATTCCGTTTGTATTAGACCTGATCAGGTTACCAAATCCATTGAAGGACTGCTTCCT 648
Query 602 TTGCCAAAGATTCATAACCCAAATGACCCACGGAGAATCGAGTTGAAAGAGCTCGAAGCT 661
||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 649 TTGCCAAAGATCCATAACCCAAATGACCCTCGGAGAATCGAGTTTAAAGAGCTTGAAGCT 708
Query 662 GTAAAGGCAGTGATCGATGTGAAAGCGCACTCTTTGGTGCGGAAAGAACTTTGGGCTGGT 721
| |||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||
Sbjct 709 GAAAAGGCAGTGATCGATGTGAAAGCTCACACTTTGGTGCGGAAAGAGCTTTGGGCTGGT 768
Query 722 CTTGGTTACTTGATCCTACAGACCGCGGGGTTCATGAGGCTAACGTTTTGGGAACTCTCG 781
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 769 CTCGGTTACTTGATCCTACAGACTGCGGGGTTCATGAGGCTAACGTTTTGGGAACTCTCG 828
Query 782 TGGGATGTGATGGAACCGATCTGTTTCTATGTCACGTCCGTATACTTTATGGCTGGTTAC 841
||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 829 TGGGACGTGATGGAGCCAATCTGTTTCTATGTCACGTCCGTGTACTTTATGGCTGGTTAC 888
Query 842 GCGTTTTTCCTCAGGACATCGAAAGAGCCTTCTTTTGAAGGGTTTTACCAAAGCAGGTTC 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GCGTTTTTCCTCAGGACATCGAAAGAGCCTTCTTTTGAAGGGTTTTACCAAAGCAGGTTC 948
Query 902 GAGGCGAAACAGAGAAAGTTGATGAATGATTATGAGTTTGATCTCGAGAGGTATGATGAA 961
||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||
Sbjct 949 GAGGCGAAACAGAGAAAGTTGATGAATGAGTATGAGTTTGATCTGGAGAGGTATAATGAA 1008
Query 962 CTGAAGAAGCTGTTTTGCTCTAAGCCTTCAGCTCATGTTTCCAAGATTCTTGGAGCTATC 1021
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1009 CTGAAGAAGCTGTTTTGCTCTAAGCCTTCGGATCATGTTTCCAAGATTCTTGGAGCTATC 1068
Query 1022 AAGAATTAAA-TTTTGAATAGGaaaaaaaTT 1051
|||| ||||| |||||| |||| |||||||
Sbjct 1069 AAGAGTTAAAATTTTGATTAGGGGAAAAATT 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51540234822
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5