BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932470
Length=1276
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24330.1 | Symbols: | Protein of unknown function (DUF2296)... 1919 0.0
> AT2G24330.1 | Symbols: | Protein of unknown function (DUF2296)
| chr2:10347160-10349825 REVERSE LENGTH=1666
Length=1666
Score = 1919 bits (1039), Expect = 0.0
Identities = 1188/1259 (94%), Gaps = 13/1259 (1%)
Strand=Plus/Plus
Query 9 AAGGAATCGGAAATGGCGGTGGGAGAGAAAGAGCACGAAGGAACGGTGGTTGAGAGCGGT 68
|||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 248 AAGGAATCAGAAATGGCGGTGGGAGAGAAGGAGCACGAAGGAACTGTGGTTGAAAGCGGC 307
Query 69 GGCGAGAAGAATGATTCCGCCGTTGTACTCTCTGCTTCCGGCGAGAAGAAGACGACGAAG 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GGCGAGAAGAATGATTCCGCCGTTGTACTCTCTGCTTCCGGCGAGAAGAAGACGACGAAG 367
Query 129 CGTAAAGGTTTGTTCTCGCGTATTTGGAATGCGATATTTAGGGTTAGAGGTGATGATTTC 188
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 368 CGTAAAGGTTTGTTCTCGCGTCTTTGGAATGCGATATTTAGGGTTAGAGGTGATGATTTC 427
Query 189 GAGAAGAGACTTAAGAATATCTCAAAGGAAGAAGCGACTGTTCGTAATAGAATGAAGCGT 248
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 428 GAGAAGAGACTTAAAAATATCTCAAAGGAAGAAGCGACTGTTCGGAATAGAATGAAGCGT 487
Query 249 AGATCGATTACAAGGAGGAACTTCATTAGAAATCTCATTGCTTTCTCTGTCTTCTTTGAG 308
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 488 AGATCGATTACAAGGAGGAACTTCATTAGAAATCTCATCGCTTTCTCTGTCTTCTTTGAG 547
Query 309 GTAATTGCAGTGAGTTATGCAATCATGACAACCAGAGATGAGGATTTGGATTGGAAACTG 368
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 548 GTAATTGCAGTGAGTTATGCAATCATGACCACCAGAGATGAGGATTTGGATTGGAAACTG 607
Query 369 AGGAGTTTCAAGATCTTGCCAATGTTTCTTTTACCTGTTGTTGCCTTTCTTCTCTATTCT 428
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 608 AGGAGTTTCAGGATCTTGCCAATGTTTCTTTTACCTGCTGTTGCCTTTCTTCTCTATTCT 667
Query 429 TCACTCGTTGGTTTCTGGAGGATGTGTGACCGCAGAGATCAGCATACCTTGGAAAAGCTT 488
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 668 TCACTTGTTGGCTTCTGGAGGATGTGTGACCGCAGAGATCAGCATACCTTGGAAAAACTT 727
Query 489 CAAGCAGAAATGTTGGGAAAGATCAATGAGTTAAAGGAAAGGACCAATTATTACATTACA 548
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 728 CAAGCAGAAATGTTGGGAAAGATTAATGAGTTAAAGGAAAGGACCAATTATTACATTACA 787
Query 549 CAACAACTTATTCAGAGGTATGACCCTGACCCAGCTGCAAAGGCGGCTGCTGCAACTGTT 608
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 CAGCAACTTATTCAGAGGTATGACCCTGACCCAGCTGCAAAGGCGGCTGCTGCAACTGTT 847
Query 609 CTGGCATCCAAGTTGGGTGCTGAGTCAGGCTTGAAAGTATTTGTAGGAGATGAATCCCAA 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 CTGGCATCCAAGTTGGGTGCTGAGTCAGGCTTGAAAGTATTTGTAGGAGATGAATCCCAA 907
Query 669 CTTGACCCCACCCCAGGCAAGAGCAATGACATGGAAGCCAAACACTCACGAGGGCTCAGG 728
||||| |||||| |||| || || || | ||| |||||||||| |||||||||||
Sbjct 908 CTTGAGCCCACCGCAGG-AA-AG-AAC-A-ATG----CCAAACACTCGGGAGGGCTCAGG 958
Query 729 AACCGAAGACA-ACCAAATACAAAACACAACAGTGCTGGGACCACTCCAACCCATCATTC 787
||||||| ||| || |||||||| | |||||| |||| ||||||||||| ||||||||
Sbjct 959 AACCGAAAACAGAC-AAATACAAGAGGCAACAGCGCTGAGACCACTCCAATTCATCATTC 1017
Query 788 TGATAATGAGTCTAACCATTCGGGGACAAGCGAAAGAATCACCGGCACAGAGCAAAGCCA 847
|||||||||||||||||||| || |||||||||||||||||||||||||| |||| |||
Sbjct 1018 GGATAATGAGTCTAACCATTCTGGAACAAGCGAAAGAATCACCGGCACAGAACAAAACCA 1077
Query 848 ACAGATGGTGTTTGAGCATTTTAATCCTCATGGA-TATGCTGCTCATGATGGTAGCTGGA 906
|||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||
Sbjct 1078 ACAGATGGTGTTTGAGCATTATAATCCTCA-GGAATATGCTGCTCATGATGGTAGCTGGA 1136
Query 907 TCTCACGCATTGCGGCTCTCCTTGTAGGGGAAGATCCAACTCAGTCATATGCACTCATCT 966
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1137 TCTCACGCATTGCGGCTCTCCTTGTAGGCGAAGATCCAAGTCAGTCATATGCACTCATCT 1196
Query 967 GTGGAAACTGCCGTATGCATAACGGACTCGCTCGGAAAGAGGATTTCCTGTACACTACTT 1026
||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||
Sbjct 1197 GTGGAAACTGCCGTATGCATAACGGACTCGCCCGGAAAGAGGATTTCCCATACATTACTT 1256
Query 1027 ACTACTGTCCTCATTGTCGAGCTCTGAACAAGCCGAAACATTCAGAAGAGCATTTACTTA 1086
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1257 ACTACTGTCCTCACTGTCGAGCTCTGAACAAGCCGAAACATTCAGAAGAGCATTCACTTA 1316
Query 1087 TTGCTCCTGCAGATACACTCCCTAAAGTTTCTCTGAAGCCAATGAAAAGGGAAGTGATCA 1146
|||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||
Sbjct 1317 TTGCTCCTGCAGATACACTCCCTAAAGTTTCTCTAAAGCCAATGGAAAGTGAAGTGATCA 1376
Query 1147 ATAGCAGTAGCTCGACGAGTGAATGCGGTAACAGTCCAATCCCTTTGTTAAAAAGTCAAG 1206
|||||||||||||||| |||||| |||||||||||||||||||||||||| | | || ||
Sbjct 1377 ATAGCAGTAGCTCGACTAGTGAACGCGGTAACAGTCCAATCCCTTTGTTACACACTCCAG 1436
Query 1207 AAATCGTGGAAGAAGTCCCAGAAATAGCTGAGACCGAGACACCAAACTGACCTGAGAAA 1265
||||||||||||||||||| |||| |||||||| ||||||||||||||||| ||||||
Sbjct 1437 AAATCGTGGAAGAAGTCCCGGAAACAGCTGAGAATGAGACACCAAACTGACCCGAGAAA 1495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62750681250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5