BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932590
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24820.1 | Symbols: TIC55-II | translocon at the inner envel... 2647 0.0
> AT2G24820.1 | Symbols: TIC55-II | translocon at the inner envelope
membrane of chloroplasts 55-II | chr2:10574979-10576938
FORWARD LENGTH=1788
Length=1788
Score = 2647 bits (1433), Expect = 0.0
Identities = 1582/1654 (96%), Gaps = 10/1654 (1%)
Strand=Plus/Plus
Query 10 AAGACTCCTCCATGGCTGTTCCATTTCTAAGCTCTTCTCTTCTACTCACACCCACTTCTC 69
|||| ||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 49 AAGAATCCGCCATGGCTGTTCCATTTCTAAGCTCTTCTCTACAACTCACACCCACTTCTC 108
Query 70 CGATTCTCTTCACTAAACTAACA-C--CACCAATAATCCACAACCAGAGATCAACACCAT 126
||||||||||||||||| ||||| | ||||||||||||||||||| ||||| | | |||
Sbjct 109 CGATTCTCTTCACTAAAGTAACACCAACACCAATAATCCACAACCACAGATC-A-A-CAT 165
Query 127 GCACTGTACCCACAAAACCCCGTCTACGTCTCCTCCGCCGTTCCGCCGTCGCTGGAACCG 186
||||| |||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 166 GCACTATACCCACAAAGCCTCGTCTACGTCTCCTCCGCCGCTCCGCCGTCGCTGGAACCG 225
Query 187 CCGT-TGCTGATCAAACAGAAGGAGGAGGAGAGGTTCTTTTAAACCCTGAAGAAGAGAAA 245
|||| | ||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 226 CCGTAT-CTGATCAAACAGAAGGAGGTGGAGATGTTCTTTTAAACCCTGAAGAAGAGAAA 284
Query 246 CGTGTTGAGGTAGCAGATTATGATTGGACAGAGGAGTGGTACCCATTGTACCTCACTAAA 305
||||||||||| || |||||||||||||||||||| ||||| ||||||||| | ||||||
Sbjct 285 CGTGTTGAGGTGGCGGATTATGATTGGACAGAGGAATGGTATCCATTGTACTTAACTAAA 344
Query 306 AACGTCCCTGACGATGCGCCGCTTGGTCTCACCGTCTACGATCGTCAAATAGTTTTGTAT 365
||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 345 AACGTCCCTGAAGATGCGCCTCTTGGCCTCACCGTCTACGATCGTCAAATTGTTTTGTAT 404
Query 366 AAAGACGGTGAAGGAACACTACGTTGTTACGAAGATCGGTGTCCTCATCGTTTGGCTAAG 425
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 405 AAAGACGGTGAAGGAACACTTCGTTGTTACGAAGATCGGTGTCCTCATCGGTTGGCTAAG 464
Query 426 TTGTCTGAAGGACAATTGATTGATGGGAGATTGGAATGTTTGTACCATGGTTGGCAATTT 485
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 465 TTGTCTGAAGGACAATTGATTGATGGGAGATTGGAATGTTTGTATCATGGTTGGCAATTT 524
Query 486 GAAGGAGAGGGTAAATGTGTCAAGATTCCTCAGCTTCCTGCGAGTGCTAAGATTCCAAAG 545
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 525 GAAGGAGAGGGCAAATGTGTCAAGATTCCTCAGCTTCCTGCAAGTGCTAAGATTCCAAAG 584
Query 546 GCGGCTTGTGTGAAGACATATGAGGTGAAAGATTCACAGGGAGTTGTATGGGTGTGGATG 605
|| |||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 585 GCTGCTTGTGTGAAGACGTATGAGGTGAAGGATTCACAAGGAGTTGTGTGGGTGTGGATG 644
Query 606 TCAACAAAGACACCTCCAAACCCTGAAAAGCTTCCTTGGTTTGAGAATTTCGCTAGACCC 665
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 645 TCAACAAAGACACCTCCAAACCCTGAGAAGCTTCCTTGGTTTGAGAATTTCGCTAGACCC 704
Query 666 GGTTTTTTCGACATTTCGACTACTCATGAGCTTCCTTATGATCATTCCATTCTTCTT-GA 724
||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||
Sbjct 705 GGTTTTTTCGACATTTCGACTACTCATGAGCTTCCTTATGACCATTCCATTCTT-TTAGA 763
Query 725 GAATCTGATGGATCCTGCTCATGTTCCTATTTCTCATGATAGAACTGACTTCACTGCTAA 784
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 764 GAATCTGATGGATCCTGCTCATGTTCCTATCTCTCATGATAGAACGGATTTCACTGCTAA 823
Query 785 AAGAGAAGATGCTCAGCCTCTGGTTTTTGAGGTTACAGAGAGAAGTAATCGGGGTTTCGC 844
||||||||||||||||||| ||||||| ||||| |||||| |||||||||||||||||||
Sbjct 824 AAGAGAAGATGCTCAGCCTTTGGTTTTCGAGGTCACAGAGCGAAGTAATCGGGGTTTCGC 883
Query 845 AGGGACTTGGGGTCGAGAGAAAGACGGAGGGAAAGGGAGTAATTTACTTCGGTTTGATGC 904
|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 884 AGGGACTTGGGGCCGAGAGAAAGAAGGTGGGAAAGGGAGTAATTTACTTCGGTTTGATGC 943
Query 905 TCCTTGTGTTCTGCAGAATAATCGAGAGTTTGAGGGGAAGGATGGAGTGAAGAACTATTT 964
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 944 TCCTTGTGTTCTGCAGAACAATCGAGAGTTCGAGGGGAAGGATGGAGTGAAGAACTATTT 1003
Query 965 TTCAGGGCTGTTTCTTTGTAGACCTACAGGGCAAGGGAAGTCTATGCTTATTGTTAGGTT 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 TTCAGGGCTGTTTCTTTGTAGACCTACAGGGCAAGGGAAGTCTATGCTTATTGTTAGGTT 1063
Query 1025 TGGGGTCACAAAAAGATCGCCTTTGGTTTCGGTGTTACCTCAATGGTTCTGGCATCAGAA 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 TGGGGTCACAAAAAGATCGCCTTTGGTTTCGGTGTTACCTCAATGGTTCTGGCATCAGAA 1123
Query 1085 TGCCTGCAAGGTTTTTGAACAAGACATGGGGTTTCTATCGTCTCAAAACGAGGTTCTGAT 1144
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1124 TGCCTGCAAGGTTTTTGAACAAGACATGGGGTTTCTATCGTCTCAAAATGAGGTTCTGAT 1183
Query 1145 GAAGGAGAAAGTACCAACTAAGGACTTGTATTTAAATCTAAAGTCATCGGACACATGGGT 1204
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1184 GAAGGAGAAAGTACCAACTAAGGACTTGTATTTGAATCTAAAGTCATCGGACACATGGGT 1243
Query 1205 CGCTGAGTATAGAAAGTGGATGGACAAAGTTGGTCACGGGATGCCTTACCATTTCGGGCA 1264
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1244 CGCTGAATATAGAAAGTGGATGGACAAAGTTGGTCATGGGATGCCTTACCATTTCGGGCA 1303
Query 1265 TAGGACCATATCTCTCCCCAAGGTCCCTCCTGTAGTGGAACATGCCCCTGCAGGGCTCAT 1324
||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 1304 TAGGACCATATCTCTCCCCAAAGTCCCTCCTGTCGTGGAACATGCCCCGGCAGGGCTCAT 1363
Query 1325 TGCAGCTCTCTCGGCTTCTTACCCTGCAAAAGGCGGAATTGGGACTATGCACGCTCCCAA 1384
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1364 TGCAGCTCTCTCTGCTTCTTACCCTGCAAAAGGCGGAATTGGGACTATGCATGCTCCCAA 1423
Query 1385 TTTGGCTAACCGGTACTTCAGACATATTATTCATTGTAGAAGCTGCAGCAATGTGATCAA 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 TTTGGCTAACCGGTACTTCAGACATATTATTCATTGTAGAAGCTGCAGCAATGTGATCAA 1483
Query 1445 ATCTTTTGAGCTCTGGAAAAATATCCTCTCTGCCACGGCAGTGGCTTTGACAACTTTGGC 1504
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1484 ATCTTTTGAGCTCTGGAAAAATATCCTCTCTGCCACGGCAGTGGCTTTGACGGCTTTGGC 1543
Query 1505 CATTCTGGTGGTTAGTAGACAGTGGAAGGCTGTCCTGTTAGGTTCGGCAGCATTGTGCTC 1564
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1544 CATTCTGGTGGTTAGTAGACAGTGGAAGGCTGTCCTGTTAGGTTCAGCAGCATTGTGCTC 1603
Query 1565 GGCCGCAGCTTATGCCTGCTTAAGAGCTATAAATCTAAACACCAATAACTTCATTAGAAC 1624
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 AGCCGCAGCTTATACCTGCTTAAGAGCTATAAATCTAAACACCAATAACTTCATTAGAAC 1663
Query 1625 ACACAGAAGACTATGAAAATGTATATTGGCATGT 1658
||||||||||||||||||||||||| || |||||
Sbjct 1664 ACACAGAAGACTATGAAAATGTATAGTGTCATGT 1697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82027690530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5