BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg932610 Length=345 Score E Sequences producing significant alignments: (Bits) Value AT2G46830.1 | Symbols: CCA1 | circadian clock associated 1 | ch... 320 5e-87 > AT2G46830.1 | Symbols: CCA1 | circadian clock associated 1 | chr2:19245672-19248909 FORWARD LENGTH=2268 Length=2268 Score = 320 bits (173), Expect = 5e-87 Identities = 205/220 (93%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 120 GAGGAGAAGAGAAACACAGGATTTCTCAGAATCGGATTGGATGCTTCAAAGCTAATAAGT 179 |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| Sbjct 1876 GAGGAGAAGAGAAACACAGGATTTCTTGGAATCGGATTAGATGCTTCAAAGCTAATGAGT 1935 Query 180 AGAGGAAGAACAACAGGTTTCAAACCATACAAAAGATGTTCCATGGAAGCCAAAGAAAGT 239 |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1936 AGAGGAAG---AACAGGTTTTAAACCATACAAAAGATGTTCCATGGAAGCCAAAGAAAGT 1992 Query 240 GGAATCCTCAACAGCAATCCTATCATTCATGTGGAACAGAAAGACCCCAAACGGATGCGG 299 |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1993 AGAATCCTCAACAACAATCCTATCATTCATGTGGAACAGAAAGATCCCAAACGGATGCGG 2052 Query 300 CTGAAAACTCAAGCTTCGACATGAAACTCTATTTTCATCT 339 || ||||||||||||| |||||| ||||||||||||||| Sbjct 2053 TTGGAAACTCAAGCTTCCACATGAGACTCTATTTTCATCT 2092 Score = 189 bits (102), Expect = 1e-47 Identities = 116/123 (94%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 1 CCAATGGTGAGGTGAAAGAAATGAATGAAGACACTAATAATCCTCAAACTTCAGAGTCCA 60 ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 1592 CCAATGGTGAGGTGAAAGAAACGAATGAAGACACTAATAAACCTCAAACTTCAGAGTCCA 1651 Query 61 ATGCACGTCGTATTATAATCAGCTCTAATATAACCGATCCATGGAAGTCTGTGTCTGACG 120 ||||||| || | || ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1652 ATGCACGCCGCAGTAGAATCAGCTCCAATATAACCGATCCATGGAAGTCTGTGTCTGACG 1711 Query 121 AGG 123 ||| Sbjct 1712 AGG 1714 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16135947429 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5