BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932610

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G46830.1 | Symbols: CCA1 | circadian clock associated 1 | ch...   320    5e-87


> AT2G46830.1 | Symbols: CCA1 | circadian clock associated 1 | 
chr2:19245672-19248909 FORWARD LENGTH=2268
Length=2268

 Score =  320 bits (173),  Expect = 5e-87
 Identities = 205/220 (93%), Gaps = 3/220 (1%)
 Strand=Plus/Plus

Query  120   GAGGAGAAGAGAAACACAGGATTTCTCAGAATCGGATTGGATGCTTCAAAGCTAATAAGT  179
             ||||||||||||||||||||||||||  |||||||||| ||||||||||||||||| |||
Sbjct  1876  GAGGAGAAGAGAAACACAGGATTTCTTGGAATCGGATTAGATGCTTCAAAGCTAATGAGT  1935

Query  180   AGAGGAAGAACAACAGGTTTCAAACCATACAAAAGATGTTCCATGGAAGCCAAAGAAAGT  239
             ||||||||   ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1936  AGAGGAAG---AACAGGTTTTAAACCATACAAAAGATGTTCCATGGAAGCCAAAGAAAGT  1992

Query  240   GGAATCCTCAACAGCAATCCTATCATTCATGTGGAACAGAAAGACCCCAAACGGATGCGG  299
              |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1993  AGAATCCTCAACAACAATCCTATCATTCATGTGGAACAGAAAGATCCCAAACGGATGCGG  2052

Query  300   CTGAAAACTCAAGCTTCGACATGAAACTCTATTTTCATCT  339
              || ||||||||||||| |||||| |||||||||||||||
Sbjct  2053  TTGGAAACTCAAGCTTCCACATGAGACTCTATTTTCATCT  2092


 Score =  189 bits (102),  Expect = 1e-47
 Identities = 116/123 (94%), Gaps = 0/123 (0%)
 Strand=Plus/Plus

Query  1     CCAATGGTGAGGTGAAAGAAATGAATGAAGACACTAATAATCCTCAAACTTCAGAGTCCA  60
             ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct  1592  CCAATGGTGAGGTGAAAGAAACGAATGAAGACACTAATAAACCTCAAACTTCAGAGTCCA  1651

Query  61    ATGCACGTCGTATTATAATCAGCTCTAATATAACCGATCCATGGAAGTCTGTGTCTGACG  120
             ||||||| || | || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  1652  ATGCACGCCGCAGTAGAATCAGCTCCAATATAACCGATCCATGGAAGTCTGTGTCTGACG  1711

Query  121   AGG  123
             |||
Sbjct  1712  AGG  1714



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16135947429


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5