BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932640
Length=1624
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25160.1 | Symbols: CYP82F1 | cytochrome P450, family 82, su... 2386 0.0
> AT2G25160.1 | Symbols: CYP82F1 | cytochrome P450, family 82,
subfamily F, polypeptide 1 | chr2:10709064-10711240 REVERSE
LENGTH=1785
Length=1785
Score = 2386 bits (1292), Expect = 0.0
Identities = 1518/1627 (93%), Gaps = 15/1627 (1%)
Strand=Plus/Plus
Query 3 AAAACAAATCAGCCATACATGGATCTAATCCA-GCTTTTTCTTCTCTCTGCTCTC-TCTA 60
||| ||||||||||||||||||||||||| || |||||||||||||||||||||| || |
Sbjct 12 AAATCAAATCAGCCATACATGGATCTAAT-CATGCTTTTTCTTCTCTCTGCTCTCTTC-A 69
Query 61 TTTTCTTTG-TTTCATGCTTAATAAAGTCTCTGCTTCGTCCCAAGAACAGGACGAATACG 119
| ||| || ||| || |||||| ||||||| ||||||||||||||||| || || |||
Sbjct 70 TCTTCCCTGTTTTAAT-CTTAATTAAGTCTCGGCTTCGTCCCAAGAACAAGAAGAGTACA 128
Query 120 GCACCTATGATCCCCGGAGCGTGGCCATTGCTCGGCCATTTACATCTATTTGACACCGTA 179
||||||||| |||||||||| |||||||||||||| ||||||||| ||||||||||||||
Sbjct 129 GCACCTATGGTCCCCGGAGCATGGCCATTGCTCGGTCATTTACATTTATTTGACACCGTA 188
Query 180 AACCCAACTCACGTTACGTTTGGGGCAATGGCTGACGTCTATGGACCGGTGTTCATGGCA 239
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 189 AACCCGACTCACGTTACGTTTGGGGCAATGGCTGACGTGTATGGACCGGTGTTCATGGCA 248
Query 240 AAGCTTGGCTCTCTCAACGTCATGGTCATAAACAGCAAAGATGTCGCAAAAGAGATCTAC 299
|||||||||||| |||| |||||| |||||||||||||||| || || |||||||| |||
Sbjct 249 AAGCTTGGCTCTATCAAAGTCATGATCATAAACAGCAAAGAAGTGGCCAAAGAGATTTAC 308
Query 300 ACGGTCCACGACAAGGTCCTAGAACGGCCACAACTTACTGCGTCTAAGATTCTGGGCTAC 359
||||||||||||||| |||||||||| ||| ||||||||||||||||| |||| ||||||
Sbjct 309 ACGGTCCACGACAAGCTCCTAGAACGACCAGAACTTACTGCGTCTAAGCTTCTAGGCTAC 368
Query 360 AACAACTCGTTCTTGTCGTTTAGTCCTTATGGTCTTTACTGGAGAGAGATACGGAAGATA 419
||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 369 AACGACTCGTTCTTGACGTTTAGTCCTTACGGTCTTTACTGGAGAGAGATACGGAAGATT 428
Query 420 GCAACATCCGAGCTTTTTTCGACCT-CGGGAATTGATATGCTCATGTTTAGTAGAGCACG 478
||| |||||||||||| ||||| | |||| ||||||||| |||| |||||||||||||
Sbjct 429 GCAGTATCCGAGCTTTTCTCGACATCCGGG-GTTGATATGCACATGGTTAGTAGAGCACG 487
Query 479 TGAGGCTGACTTGGCATTTAGAGACTTATACGTTAGATGGGAGAAAAGAGGTGAGCCTAA 538
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 488 TGAGGCTGACTTGGCATTTAGAGCCTTATACGTTAGATGGGAGAAAAGAGGTAAGCCTAA 547
Query 539 AGAAGGAGTCTTGGTGGACATGAAGCAAGAGATCATAGATCTAACCGCGAACATCTCATT 598
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 548 AGAAGGAGTCTTGGTGGACATGAAGCAAGAGTTCATAGATCTAACTGCGAACATCTCATT 607
Query 599 GATGATGGTCGCGGGGAAGAGATACTTTGGTGAAAACCCTAACTGCGAAGTGAAAGAAGC 658
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 608 GATGATGGTCTCGGGGAAGAGATACTTTGGTGAAAACCCGAACTGCGAAGTGAAAGAAGC 667
Query 659 TAGGAGATGCGGGAAGCTGATTCGCGAGTTTTTGGATTACTTCTCACTATATTTGTTGTC 718
|||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||
Sbjct 668 TAGGAGATGCGGGAAGCTGATTCGGGAGTTTTTGGATTACTTCGCACTATTTTTGTTGTC 727
Query 719 TGATGTGACACCGGTTCTAGG-TTTGTTGGAGTGGAAGATCAAGAGAGGAATGAAGAGAA 777
|||||| |||| |||||||| ||| || || ||||||| ||||||||||||||||||||
Sbjct 728 CGATGTGGCACCAGTTCTAGGTTTTCTT-GATTGGAAGACCAAGAGAGGAATGAAGAGAA 786
Query 778 CGGCTAAAGAGTTGGATAAAGTTATTGAAGGTTGGGTTGAAGAACACAAGAACAAGAGGA 837
||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 787 CGGCTAAAGGGTTGGATAAAGTTGCTGAAGGTTGGATTGAAGAACACAAGAACAAGAGGA 846
Query 838 GTGATCACGGTAGGAGTGAAAATGACTACTTGGATATACTCATTAAGATATTGGGACATG 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 847 GTGATCACGGTAGGAGTGAAAATGACTACTTGGATATACTCATTAAGATATTGGGACAAG 906
Query 898 ACAAGATTCCGGGTTTGAGCGATACTCACACGAAAATCAAAGCCCTCTGCCTCAACTTGG 957
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 907 ACAAGATTCCTGGTTTGAGTGATACTCACACGAAAATTAAAGCCCTCTGCCTCAACTTGG 966
Query 958 TATTGGCTGGGAGCGAGACGGCCATTGTGGTTCTGGTTTGGGCGGTATCCTTGCTCTTGA 1017
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 TATTGGCAGGGAGCGAGACGGCCATTGTGGTTCTGGTTTGGGCGGTATCCTTGCTCTTGA 1026
Query 1018 ACAATCCGCATGTATTGAGGAAAGCTCAGGAGGAGCTGGACAGCAAAATTGGAAAGGAGA 1077
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 ACAACCCGCATGTCTTGAGGAAAGCTCAGGAGGAGCTGGACAGCAAAATTGGAAAGGAGA 1086
Query 1078 GAGTTGTGGAAGAGCTAGACATCAAAGATTTGGTTTACCTCCAAGCCATTGTCAAGGAGA 1137
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 GAGTTGTGGAAGAGTTAGACATCAAAGATTTGGTTTACCTCCAAGCCATTGTCAAGGAGA 1146
Query 1138 CATTTCGCCTGTACCCACCAGTCCCTCTCATTGCTTACAGAGATGTGGTGGAAGATTTCG 1197
||||||| || |||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1147 CATTTCGTCTATACCCACCAGTCCCTCTCGTTGCTTACAGAGCTGTGGTGGAAGATTTCG 1206
Query 1198 ACATTGCATGTTGCAACTGTCATGTGCCTGCGGGGACACAATTGATGGTGAGTGCATGGA 1257
||||||||| |||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1207 ACATTGCATTTTGCAAATGTCATGTACCTGCAGGGACACAATTGATGGTGAGTGCATGGA 1266
Query 1258 AGATTCATAGGGATCCAAGTGTTTGGTCCAACCCCGAACAGTTTGAGCCAGAGAGATTCT 1317
||||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1267 AGATTCACAGGGATCCAAATGTTTGGTCGAACCCCGAACAGTTCGAGCCAGAGAGATTCT 1326
Query 1318 TGACATCTAATAGAGAATTGGATGTTGGAGGGCTGAGTTACAAGTTTTTTCC-TTTCGGG 1376
|||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| |||
Sbjct 1327 TGACATCTAATAGAGAATTGGATGTTGGCGGGCAGAGTTACAAGTTTTTTCCATTT-GGG 1385
Query 1377 TTGGGACGAAGGTCATGCCCCGCGATCCCCCTAGGTATGAGGATGGTGCAGTATCTCCTA 1436
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1386 TTGGGACGAAGGTCATGCCCCGCAATCCCCCTAGGTATGAGGATGGTGCACTATCTCCTA 1445
Query 1437 G-CTAGGTTTTTGCACAGCTTTGACTTGGCAAGACCATCGAGCCAAGATGTGGACATGAC 1495
| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1446 GTC-AGGTTTTTGCACAGCTTTGACTTGGCAAGACCATCGAGTCAAGATGTGGACATGAC 1504
Query 1496 CGAGAGCAATGGATTGGTCAATCACAAAGCCACTTCTCTTGAAGTCTTTATCACTCCTAG 1555
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 1505 CGAGAGCAATGGATTGGTCAATCACAAAGCCACCCCTCTTGAAGTCAATATCATTCCTAG 1564
Query 1556 GCTTCATAAATCCCTATACGAAGTTGATCACATAGGGATTGATAATTAGTACATTGTTCG 1615
|||||||||||| ||||| ||||| ||||| ||||||| |||||||||||||||||||||
Sbjct 1565 GCTTCATAAATCTCTATATGAAGTGGATCATATAGGGACTGATAATTAGTACATTGTTCG 1624
Query 1616 TTGGCCA 1622
| |||||
Sbjct 1625 T-GGCCA 1630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80220470910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5