BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg932725 Length=881 Score E Sequences producing significant alignments: (Bits) Value AT2G25660.1 | Symbols: emb2410 | embryo defective 2410 | chr2:1... 1103 0.0 > AT2G25660.1 | Symbols: emb2410 | embryo defective 2410 | chr2:10916203-10927390 REVERSE LENGTH=6754 Length=6754 Score = 1103 bits (597), Expect = 0.0 Identities = 647/672 (96%), Gaps = 0/672 (0%) Strand=Plus/Plus Query 1 GAAGTGAAAATAAAACCAAATATGGATATCCGTCTGAGTGATATGAAACTTGTTTTAGGA 60 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5683 GAAGTGAAAATGAAACCAAATATGGATATCCGTCTGAGTGATATGAAACTTGTTTTAGGA 5742 Query 61 CCAGAGCTGAGGATAGTGTATCCTTTAATTCTTAATTTTGCTGTGAGTGGTGAGCTTGAA 120 ||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 5743 CCAGAGCTGAGGATAATGTACCCTTTAATTCTTAATTTTGCTGTTAGTGGTGAGCTTGAA 5802 Query 121 CTTGATGGCATGGCTCATCCAAAATTTATCAAACCAAAGGGTGTCCTGACATTCGAGAAT 180 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 5803 CTTGATGGCATGGCTCATCCAAAATTTATCAAACCAAAGGGTGTCCTAACATTCGAAAAC 5862 Query 181 GGAGATGTCAATCTTGTGGCTACTCAGGTACGCCTGAAGAGGGAGTATCTCAACGTTGCA 240 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 5863 GGAGATGTCAATCTTGTGGCTACTCAGGTACGTCTGAAGAGGGAGCATCTCAACGTTGCA 5922 Query 241 AAGTTTGAGCCTGAACATGGACTAGACCCTCTGCTAGATTTAGCCTTAGTTGGTTCAGAA 300 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 5923 AAGTTTGAGCCTGAACATGGACTAGATCCTCTGCTAGATTTAGCCTTAGTTGGTTCAGAA 5982 Query 301 TGGCAATTTAGGGTCCAAAGTCGTGCCAGCAATTGGCAGGAAAAACTTGTGGTGACTTCA 360 |||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||||| Sbjct 5983 TGGCAATTTAGGGTTCAAAGTCGTGCCAGTAATTGGCAGGACAAACTTGTCGTGACTTCA 6042 Query 361 ACTCGTTCTGTGGAACAGGATGCTCTCTCACCTTCCGAGGCTGCAAAGGTGTTTGAGAGC 420 || |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 6043 ACACGTTCTGTTGAACAGGATGCTCTCTCACCTTCGGAGGCTGCAAAGGTGTTTGAGAGC 6102 Query 421 CAATTAGCAGAATCAATACTAGAAGGAGATGGACAACTTGCTTTCAAAAAACTTGCAACC 480 |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 6103 CAATTAGCAGAATCCATATTAGAAGGAGATGGACAACTTGCTTTCAAAAAACTTGCAACC 6162 Query 481 GCAACACTTGAAACCATAATGCCAAGGATAGAAGGAAAAGGAGAGTTTGGTCAGGCGAGA 540 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6163 GCAACACTTGGAACCATAATGCCAAGGATAGAAGGAAAAGGAGAGTTTGGTCAGGCGAGA 6222 Query 541 TGGAGGTTGGTGTATGCCCCACAGATCCCAAGTTTACTCTCTGTTGATCCAACTGTTGAT 600 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| Sbjct 6223 TGGAGGTTGGTGTATGCTCCGCAGATCCCAAGTTTACTCTCTGTTGATCCAACTGTGGAT 6282 Query 601 CCTCTCAAGTCTTTGGCAAGCAACATATCATTTGGAACGGAAGTTGAAGTGCAGCTCGGA 660 |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 6283 CCTCTCAAGTCTCTGGCGAGCAACATATCATTTGGAACGGAAGTTGAAGTGCAGCTCGGA 6342 Query 661 AAACGTCTTCAG 672 |||||||||||| Sbjct 6343 AAACGTCTTCAG 6354 Score = 268 bits (145), Expect = 5e-71 Identities = 165/174 (95%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 708 TCTACAGGCCTCTGTGGTAAGACAGATGAAAGATTCTGAGATGGCGATGCAATGGACACT 767 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 6348 TCTTCAGGCCTCTGTGGTAAGACAGATGAAAGATTCTGAGATGGCAATGCAATGGACACT 6407 Query 768 TATCTATCAGCTCACAAGCCGCTTGCGTGTCCTTCTGCAATCTGCACCTTCCAAACGTTT 827 ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 6408 TATTTACCAGCTCACGAGCCGCTTGCGTGTCCTTCTGCAATCTGCACCTTCCAAACGTTT 6467 Query 828 GCTTTTTGAATACTCTGCTACATCACAAGACTAAAAAGCCTTTTTGTCTTCCTC 881 ||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 6468 GCTTTTTGAATACTCTGCTACATCACAAGACTAAAT--CCTTTT-GTCTTCCTC 6518 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43000429832 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5