BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg932727 Length=1310 Score E Sequences producing significant alignments: (Bits) Value AT2G25660.1 | Symbols: emb2410 | embryo defective 2410 | chr2:1... 505 5e-142 > AT2G25660.1 | Symbols: emb2410 | embryo defective 2410 | chr2:10916203-10927390 REVERSE LENGTH=6754 Length=6754 Score = 505 bits (273), Expect = 5e-142 Identities = 277/279 (99%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 992 TGATCACTGTTGAGAAAACTATTCTGGAACAAAGCAATAGCCGGTATGAGCTTCAAGGTG 1051 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3830 TGATCACTGTTGAGAAAACTATTCTGGAACAAAGCAATAGCCGGTATGAGCTTCAAGGTG 3889 Query 1052 AATATGTATTGCCGGGTTCCCGTGACCGAGACCTTGGTCAGAAGGAAGCTGGCAGttttt 1111 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3890 AATATGTATTGCCGGGTTCCCGTGACCGAGACCTTGGTCAGAAGGAAGCTGGCAGTTTTT 3949 Query 1112 ttATGAGAGCCATGACTGGTCATCTAGGAAGTGTTATATCCTCCATGGGTAGATGGAGAA 1171 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 3950 TAATGAGAGCCATGACTGGTCATCTAGGAAGTGTTATATCCTCCATGGGAAGATGGAGAA 4009 Query 1172 TGAGACTTGAAGTGCCTAAGGCAGAGGTTGCTGAGATGCTTCCTCTTGCAAGGCTTCTTT 1231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4010 TGAGACTTGAAGTGCCTAAGGCAGAGGTTGCTGAGATGCTTCCTCTTGCAAGGCTTCTTT 4069 Query 1232 CAAGAAGTACAGATCCAGCTGTTCACTCAAGATCAAAGG 1270 ||||||||||||||||||||||||||||||||||||||| Sbjct 4070 CAAGAAGTACAGATCCAGCTGTTCACTCAAGATCAAAGG 4108 Score = 211 bits (114), Expect = 1e-53 Identities = 120/123 (98%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 871 GCAGAGATTCAACTAAATCTTCAGAAGCGAAGAGGACATGGCCTGTTGTCTGTAATTCGG 930 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 3676 GCAGAGATTCAACTAAATCTTCAGAAGCGAAGAGGGCATGGCCTGTTGTCTGTAATTCGG 3735 Query 931 CCAAAATTTAGTGGAGTTCTAGGTGAAGCTTTAGATGTTGCAGTCAGATGGAGCGGTGAC 990 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 3736 CCAAAGTTTAGTGGAGTTCTAGGTGAAGCTTTAGATGTTGCAGTAAGATGGAGCGGTGAC 3795 Query 991 GTG 993 ||| Sbjct 3796 GTG 3798 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64457499780 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5