BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932740

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G25720.1 | Symbols:  | unknown protein; Has 38 Blast hits to...   486    5e-137


> AT2G25720.1 | Symbols:  | unknown protein; Has 38 Blast hits 
to 38 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:10955519-10956052 REVERSE 
LENGTH=534
Length=534

 Score =  486 bits (263),  Expect = 5e-137
 Identities = 335/368 (91%), Gaps = 11/368 (3%)
 Strand=Plus/Plus

Query  21   ATGTCAGATCCTTACGAGAGAGTGAACGGTGGAAGATTGGCGTTCAAAGGAGGAGATCTA  80
            |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  36   ATGTCAGACCCTTACGAGAGAGTGAATGGTGGAAGATTGGCGTTCAAAGGAGGAGATCTA  95

Query  81   GCCACAAGGAAATCGATCGACaagaagaataagaagaagcagaagaagaagaaagaaaag  140
            || ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct  96   GCGACAAGGAAATCGATCGAAAAGAAGAAGAAGAAGAAGCAGAAGAAGAACAAAGAAAAG  155

Query  141  ctcga--g-g--ga-ga---agtgaagaTGGCTCCCGACGGTTCAGCCACTTCCGCCGCT  191
            |||||  | |  || ||   || |||||  ||||| ||||||||| || || ||||||||
Sbjct  156  CTCGACGGTGTTGAGGATGGAGCGAAGACAGCTCCTGACGGTTCACCCCCTCCCGCCGCT  215

Query  192  GCCGTTGTAGATGATGATATATACTCAATTGATGCGGCGAAGAAGAAGAAGTACGATGAC  251
            |||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  216  GCCGCTGGAGATGAAGATATATACTCAATTGATGCGGCGAAGAAGAAGAAGTACGATGAC  275

Query  252  CTGTTTCCTGTGGAGGCGAAGAAGTTTGGTTACATTCCGAAATCAAATTTCGAATCCATG  311
            || ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
Sbjct  276  CTATTTCCTGTGGAGGCGAAGAAGTTCGGTTACATTCCGAAAGCAAATTTCGAATCCAGG  335

Query  312  GAAGATGCTCTTGACGATCGCGTCAAGAAGAAAGCTGATCGTTATTGTAAATAAACTCT-  370
            ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| 
Sbjct  336  GAAGATGCTCTTGACGATCGCGTCAAGAAGAAAGCTGATCGCTACTGTAAATAAACTCTT  395

Query  371  CTT-TTTG  377
            ||| ||||
Sbjct  396  CTTGTTTG  403



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18146657389


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5