BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932895
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02830.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 819 0.0
> AT5G02830.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:644279-648466 REVERSE LENGTH=2783
Length=2783
Score = 819 bits (443), Expect = 0.0
Identities = 518/554 (94%), Gaps = 6/554 (1%)
Strand=Plus/Plus
Query 121 CTCCTCCTCCATAACCAATCCTCACCACCACCACCGTCGCTGTTACGCCACCGCACCAGA 180
||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 75 CTCCTCCGCCATAACCAATCCTCACCATCACCACCGTCGCTGTTACGCCACAGCACCAGA 134
Query 181 GCCCAACC-GAAAAGCTAAATCCAATTCTTCTCTCACCAAGCTACTCCCGTCACTACCGC 239
| |||||| ||||| ||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 135 GTCCAACCGGAAAA-CTAAATCCAATTCTTCTTTCACCAAGCTACTTCCGTCACTACCGC 193
Query 240 AGCAACACTCACCTTCTCCTGCTCCAGTCTCCGCGACTCATTCTCTCTCTAATCACTTCT 299
||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 194 AGCAACATTCACCTTCTCCTGCTTCAGTCTCCGCGACTCATTCTCTCTCTAGCCACTTCT 253
Query 300 CTAACATCGTAAGATGGATTCCAGATGGCTCG-TTGGAGTATTACGCTGATTTCGCCTCG 358
| || |||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 254 CCAATGTCGTAAGATGGATTCCAGATGGCTCGCTT-GAGTATTACGCTGATTTTGCCTCG 312
Query 359 AAGCTCGCTGAGGATGGCCGAATTGAGGACGTCGCTCTCATCGCCGAGACCTTGGCTGCA 418
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 313 AAGCTAGCTGAGGATGGTCGAATTGAGGACGTCGCTCTCATCGCCGAGACTTTGGCTGCA 372
Query 419 GAGTCCGGAGCTAATGTGGCACGCTTCGCTTCCATGGTTGATTATGATCTCTTATCGAAA 478
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 373 GAGTCCGGAGCTAATGTGGCTCGTTTCGCTTCCATGGTTGATTATGATCTCTTATCGAAA 432
Query 479 GGGATTTCGTCGAATCTTCGACAAGGTAAGATTGAGAGCGTTGTTTACACTTTGAAGAGA 538
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 433 GGGATTTCGTCGAATCTTCGACAAGGTAAGATTGAGAGCGTCGTTTACACTTTGAAGAGA 492
Query 539 ATTGAGAAGGTAGGGATTGCTCCATTGGACCTCGTCGATGAAACGTCTGTGAAACTAATG 598
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 493 ATTGAGAAGGTAGGAATTGCTCCATTGGACCTTGTCGATGATTCGTCTGTGAAATTAATG 552
Query 599 AGGAAACAGTT-CGTTCAATGGCTAACTCTTTGCAAGTGGAGAAAGCTATTGACCTAATG 657
||||||||||| || |||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 553 AGGAAACAGTTTCGAGCAATGGCTAACTCTGTGCAAGTGGAGAAAGCTATTGATCTAATG 612
Query 658 GA-ATTCTTGCCGG 670
|| || ||||||||
Sbjct 613 GAGATACTTGCCGG 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32652195550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5