BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932927
Length=689
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26500.2 | Symbols: | cytochrome b6f complex subunit (petM)... 876 0.0
> AT2G26500.2 | Symbols: | cytochrome b6f complex subunit (petM),
putative | chr2:11270218-11270874 FORWARD LENGTH=557
Length=557
Score = 876 bits (474), Expect = 0.0
Identities = 512/530 (97%), Gaps = 4/530 (1%)
Strand=Plus/Plus
Query 160 CTTTCTTTGAGTCGCTTCACTTCTCTTGCATCCTTCAAACTCATCCACAGCAAGAAATGG 219
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1 CTTTCTTTGAGTCGCTTCACTTCTCTTGCATCCTTCAAACTCATCCACAG---G-AATGG 56
Query 220 CGACAGCAGCAGCACCAGCAGTGATCTCATGGACAAGATCAGGCATTGTGTCCAAATCCG 279
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 57 CGACAGCAGCAGCACCAGCAGTGATTTCATGGACAAGATCAGGCATTGTGTCCAAATCCG 116
Query 280 GACAAACCCAGAAGAAAACTGAGATGAAAGTTTCTTACATAACTGGACTTAATTCATATG 339
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 117 GACAAACCCAGAAGAAATCTGAGATGAAAGTTTCTTACATAACTGGACTTAACTCATATG 176
Query 340 GTGGTCTTAAGGCACAGAACAACAAGGTTGTCTCAATGGGATCACCACTCTGCACAGAAC 399
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GTGGTCTCAAGGCACAGAACAACAAGGTTGTCTCAATGGGATCACCACTCTGCACAGAAC 236
Query 400 AGTGTTTTGCTAATGTTGTGATGTCTCTCAAAGGAAGAAGAGGCAATGGAGGAGCCTTAT 459
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 237 AGTGTTTTGCTAACGTTGTGATGTCTCTCAAAGGAAGAAGAGGTAATGGAGGAGCCTTAT 296
Query 460 CCACCACGTGTAACGCTGTGGGGGAGATTTTCAAGATTGCAGCAATCATGAACGCTCTTA 519
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 297 CCACCACGTGTAACGCTGTCGGAGAGATTTTCAAGATTGCAGCAATCATGAACGCTCTTA 356
Query 520 CTCTTGTTGGTGTTGCTGTTGGATTCGTTCTTCTTCGAATCGAGACTTCTGTTGAAGAAG 579
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 357 CTCTTGTTGGTGTTGCAGTTGGATTCGTTCTTCTTCGAATCGAAACTTCTGTTGAAGAAG 416
Query 580 CTGAAGCAGAGTAAATAGAGTAAATTGCTGTTCTTATAATTATATATTTTTTGTTATTGT 639
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 417 CTGAAGCAGAGTAAATAGAGTAAATTGCTGCTCTTATAATTATATATTTTTGGTTATTGT 476
Query 640 TGTTGTCAAGCTTTGGGAAAACTTGATGGATACATGTTATATTTGTTTAT 689
|||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 477 TGTTGTCAAGCTTTGGTAAAACTTGATGGATACATGTTACATTTGTTTAT 526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33355473608
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5