BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg932941 Length=914 Score E Sequences producing significant alignments: (Bits) Value AT1G30825.1 | Symbols: ARPC2A, DIS2 | Arp2/3 complex, 34 kD sub... 285 5e-76 AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting c... 226 3e-58 AT5G52560.1 | Symbols: ATUSP, USP | UDP-sugar pyrophosphorylase... 187 1e-46 > AT1G30825.1 | Symbols: ARPC2A, DIS2 | Arp2/3 complex, 34 kD subunit p34-Arc | chr1:10960941-10963182 FORWARD LENGTH=1305 Length=1305 Score = 285 bits (154), Expect = 5e-76 Identities = 187/203 (92%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 284 TCTTGATAAAGCTGTGGAGCTAAATTATCAGTGGATTGCATTTGATGATGTTTGTTACCA 343 |||||||||||| ||||||||| ||||||| ||||||| ||||||||||||| ||||||| Sbjct 228 TCTTGATAAAGCAGTGGAGCTAGATTATCAATGGATTGAATTTGATGATGTTCGTTACCA 287 Query 344 TGTTCAGGTGACAGTGAAGAATCCAAACCTCTTGTTGCTTGT-GGTTTCGTTACCAAATC 402 ||||||||||||| ||||||||||||| || ||||||||| | ||||||||||||||||| Sbjct 288 TGTTCAGGTGACAATGAAGAATCCAAATCTGTTGTTGCTT-TCGGTTTCGTTACCAAATC 346 Query 403 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCATTAGGAGCTATAGAAGCCATTAAAG 462 |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 347 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCTTTAGGAGCTATAGAAGCTATTAAAA 406 Query 463 CTACTTACAGGACTGGTTTTCAA 485 | |||||| |||| ||||||||| Sbjct 407 CCACTTACGGGACAGGTTTTCAA 429 > AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting complex gene 3 | chr1:22700010-22701383 FORWARD LENGTH=1198 Length=1198 Score = 226 bits (122), Expect = 3e-58 Identities = 145/155 (94%), Gaps = 5/155 (3%) Strand=Plus/Plus Query 762 TGATCATCCATCTCATGTG-TTTTATGTCTCTTTGTATCCTAAAATCTTTCTATCTCTT- 819 ||||||| ||||||||||| ||||||||||| ||||||| || ||| |||| |||| || Sbjct 967 TGATCAT-CATCTCATGTGTTTTTATGTCTC-TTGTATCGTACAATATTTCCATCT-TTC 1023 Query 820 GCTACCATTGGCTTCTTCGTATTGTAACACCCTGTGTAAACATATTCGTGTTTTGTAAGA 879 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1024 GCTACCATTGGCTTCTTCGTATTGTAACACCCTGTGTAAACATATTCGTGTTTTGTAAGA 1083 Query 880 AATGACAATGTCAATGGCCAAAAGAAAAAACTTTT 914 |||||||||||||||||||||| |||||||||||| Sbjct 1084 AATGACAATGTCAATGGCCAAACGAAAAAACTTTT 1118 > AT5G52560.1 | Symbols: ATUSP, USP | UDP-sugar pyrophosphorylase | chr5:21330639-21334811 FORWARD LENGTH=2375 Length=2375 Score = 187 bits (101), Expect = 1e-46 Identities = 111/116 (96%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 483 CAAGAGGTTGAAGTATTGTCTCATATCACATGGAAACCCAAGTGGGGAATGATCTTCTCT 542 |||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||| Sbjct 1775 CAAGAGGTTGAAGTATGGTCTCGTATCACATGGAAACCCAAATGGGGAATGATCTTCTCT 1834 Query 543 GATATCAAAAAGAAAGTCAGCAGGAACTGCGAGGTCTCTCAGAGATCCACGATGGC 598 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 1835 GATATCAAAAAGAAAGTCAGCGGGAACTGCGAGGTCTCTCAGAGATCCACAATGGC 1890 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44658156683 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5