BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932958
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26660.1 | Symbols: ATSPX2, SPX2 | SPX domain gene 2 | chr2:... 1376 0.0
> AT2G26660.1 | Symbols: ATSPX2, SPX2 | SPX domain gene 2 | chr2:11338932-11340950
FORWARD LENGTH=1111
Length=1111
Score = 1376 bits (745), Expect = 0.0
Identities = 842/889 (95%), Gaps = 5/889 (1%)
Strand=Plus/Plus
Query 23 ATGAAATTCGGCAAGAGCCTAAGCAACCAGATCGAAGAAACTTTACCTGAATGGCGCGAC 82
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGTTCGGCAAGAGCCTAAGCAACCAGATCGAAGAAACTTTACCTGAATGGCGCGAC 60
Query 83 AAATTTCTCTCCTACAAAGAACTCAAGAAGAAGCTCAAGCTTATGGAGCCACGAACCGTC 142
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 AAATTCCTCTCATACAAAGAACTCAAGAAGAAGCTCAAGCTTATGGAGCCACGAAGCGTC 120
Query 143 GAGAATCGTCCAACCAAACGTTCGAGATCCGATTCCAATTCTGTCGACGCAGATCCAACG 202
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 GAGAATCGTCCAAATAAACGTTCGAGATCCGATTCCAATTCTGTCGACACAGATCCAACG 180
Query 203 GCTGGTATGACCAAGGAAGAGCTCGATTTCATTAGTCTTCTCGAAGACGAGCTTGAGAAA 262
| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 181 GTTGGTATGACCAAGGAAGAGCTTGATTTCATTAGTCTTCTTGAAGATGAGCTTGAGAAA 240
Query 263 TTCAATTCCTTCTTCGTTGAGCAAGAGGAAGAGTATATCATTAGATTAAAGGAATTGAAG 322
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 TTCAATTCCTTCTTCGTTGAGCAAGAGGAAGAGTATATCATTAGATTGAAGGAATTGAAG 300
Query 323 GATCAAGTGGC-AAAGGCGACGAATTCGAATGAAGAGATGATAAATATAAAGAAAGAGAT 381
|| |||||||| ||| |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 301 GACCAAGTGGCGAAA-GCGAAGAATTCTAATGAAGAGATGATAAATATAAAGAAAGAGAT 359
Query 382 TGTTGATTTTCATGGAGAAATGGTTTTGTTAATGAATTATAGTGCTCTTAACTATACAGG 441
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 TGTTGATTTTCATGGAGAAATGGTTTTGTTGATGAATTATAGTGCTCTTAACTATACAGG 419
Query 442 ATTGGCAAAGATTCTCAAAAAGTATGACAAAAGAACCGGTGCTTTAATCCGTTTACCATT 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATTGGCAAAGATTCTCAAAAAGTATGACAAAAGAACCGGTGCTTTAATCCGTTTACCATT 479
Query 502 TATCCAAAAGGTTCTACAAGAACCTTTCTTCACTACCGACCTGCTCAACACATTTGTGAA 561
||||||||||||| | ||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 480 TATCCAAAAGGTTTTGCAAGAACCTTTCTTCACAACTGACCTACTCAACACATTTGTGAA 539
Query 562 AGAGTGCGAGGCTATGCTCGACCATCTCTTCCCGTCTAACAAAAGTCGGAATCTGGATGA 621
|||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct 540 AGAGTGCGAGGCTATGCTGGACCGCCTCTTTCCGTCTAACAAAAGTCGGAATCTGGATGA 599
Query 622 AGAAGAGGGAGAACCGACAACTTCTGGAACGGTCAAGACAGCAACAGACGACTCTGATCT 681
||||| | ||| |||||||||||||||| ||||||||||| ||| ||||| ||||| ||
Sbjct 600 AGAAG-GAGAG--CCGACAACTTCTGGAATGGTCAAGACAGGAACGGACGATTCTGAACT 656
Query 682 TCTTAGAGTACCGAAAGAACTGTCTGAGATTGAGTATATGGAGAGCTTGTTTATGAAGAG 741
|||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 657 TCTTAGAGTACCAAAAGAACTGTCTGAGATTGAGTACATGGAGAGCTTGTATATGAAGAG 716
Query 742 CACTGTTTCGGCATTAAAGGTATTAAAGGAAATCCGCAGTGGTAGCTCAACAGTAAGCGT 801
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 717 CACTGTGTCGGCATTAAAAGTATTAAAGGAAATCCGCAGTGGTAGCTCAACAGTTAGCGT 776
Query 802 CTTCTCGATGCCACCATTACCGGCAAGTGGATTAGAAGATGATTCATGGAAGAAGAAGGT 861
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 777 CTTCTCGTTGCCACCGTTACCGGCAAGTGGATTAGAAGATGATTCATGGAAGAAGAAAGT 836
Query 862 TGGTGTCCTCGAACAAGTAGCGAAATGAATTATGACTATTATTATTTTT 910
||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 837 TGGTGTCCTTGAACAAGTAGCGAAATGAATTATGAGTATTATTATTTTT 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44557688389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5