BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg933013 Length=1967 Score E Sequences producing significant alignments: (Bits) Value AT2G26920.1 | Symbols: | Ubiquitin-associated/translation elon... 2946 0.0 > AT2G26920.1 | Symbols: | Ubiquitin-associated/translation elongation factor EF1B protein | chr2:11489004-11491751 FORWARD LENGTH=2260 Length=2260 Score = 2946 bits (1595), Expect = 0.0 Identities = 1853/1976 (94%), Gaps = 23/1976 (1%) Strand=Plus/Plus Query 11 AGGGGTATTGATGTTCTTTGCAGAGATGTCTCCAGCAACAAAGTCAAAGTCTAAGGATaa 70 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 147 AGGTGTATTGATGTTCTTTGCAGAGATGTCTCCAGCAACAAAGTCAAAGTCTAAGGATAA 206 Query 71 aaaaaCTGGAAAAGAAGCTCAAAAGGCATCACCAAAGCCTACACTTTCGGTTAATGGGAA 130 ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 207 AAAAACTGGTAAAGAAGCTCAAAAGGCATCACCAAAGCCTTCACTTTCGGTTAATGGGAA 266 Query 131 TAGCAGCTTAGCAGCTAGTGCTTATAATCCTCTTCTAGGAACATTTCAAGCTCTCGATTC 190 ||||||||| |||||||||| ||||||||||||| ||||||||||||||||||| ||||| Sbjct 267 TAGCAGCTTGGCAGCTAGTGGTTATAATCCTCTTTTAGGAACATTTCAAGCTCTTGATTC 326 Query 191 AGTCTCGATAGCTTCTATCTCACCGCTACAGTATGGTCGTTTCCGGAGTATAGATGAAGC 250 ||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| || Sbjct 327 AGTGTCGATAGCTTCTATCTCACCATTACAGTATAGTCGTTTCCGGAGTATAGATGAGGC 386 Query 251 AGATGTAAATGGGATTGAGTCTGATTCTGTTTCAAACAATGGTAGCTGCTCGGGCGAGTC 310 ||||||||||||||||||||||||||| ||||| || ||||||||||| || || ||||| Sbjct 387 AGATGTAAATGGGATTGAGTCTGATTCAGTTTCGAATAATGGTAGCTGTTCTGGTGAGTC 446 Query 311 GGAAGATCACAAGGAGAAAACAACTAGTCTG-CCCTTCAAGCAGGAGGTGATACCAGGTG 369 ||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||| Sbjct 447 AGAAGATCACAAGGAGAAAACAACTAATCTGCCCCTT-AAGCAGGAGGTGATACCAGGTG 505 Query 370 CAGACAATGACAAGCGAGAAAAAGTTCGTCAAAAGAATGAGAGAAAACATCAACGCCAGA 429 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 506 CAGATAATGACAAGCGAGAAAAAGTTCGTCAAAAGAATGAGAGAAAACATCAACGCCAGA 565 Query 430 AAGAGAGGAGGGCTCAGGAGTTGTATGAGAAGTGTAGTACATATCTCATTTCTAGAAAGC 489 | ||||||||||||||||||||| ||||||||||||| |||||||| ||||| ||||||| Sbjct 566 AGGAGAGGAGGGCTCAGGAGTTGAATGAGAAGTGTAGCACATATCTTATTTCCAGAAAGC 625 Query 490 TTGAAGCCCGTATACAGCAACTTGTAGCAATGGGGATATCTCAAGAGCATGCAACAACAG 549 |||||||||||| ||||||| |||| |||||||| ||||||||||||||||| ||||| | Sbjct 626 TTGAAGCCCGTACACAGCAAATTGTGGCAATGGGAATATCTCAAGAGCATGCGACAACGG 685 Query 550 CATTGATGATGAATGATGGCAAAGTAGAGCAATCTGTTCATTGGTTGTTTGACAGGGGTG 609 |||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||| || Sbjct 686 CATTAATGATGAATGATGGTAAAGTAGAGGAATCTGTTCATTGGTTGTTTGATAGGCTTG 745 Query 610 AGGAAGAAATAGAGAAGCAAAGCGTTCAGAGTCCTGGGAATTTGAAAATAGATATAACAG 669 ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 746 AGGAAGAAATAGAGAAGCAAAGCATTCAGAGTCCTGGGAATTTGAAAATAGACATAACAG 805 Query 670 AAGAACTAGCTAGGATTACACAAATGGAGCTACAACTTAAGTGTACAAGGCAGGAAATAG 729 |||| ||||||||||||||| |||||||| | |||||||||||||||||||||||||||| Sbjct 806 AAGAGCTAGCTAGGATTACAAAAATGGAGTTGCAACTTAAGTGTACAAGGCAGGAAATAG 865 Query 730 AGCGTGCGGTTGTTCAAGCAGAGGGTGATTTGGACAGAGCAGAAGAAGTCGTGAAAGGCA 789 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 866 AGCGTGCGGTTGTTCAAGCAGAGGGTGATTTGGACAGAGCAGAAGAAGTCTTGAAAGGCA 925 Query 790 CAAAGTATGAAGAGTTTTCTGTGCCAGTGAAACAAGAAGAATCTAGTGATCCTCTTACAC 849 ||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||| Sbjct 926 CAAAGTATGAAGAGTTTTCTGTGCCAGTGAAACAAGAGGAATGTGGTGATCCTCTTACAC 985 Query 850 CCAGTAATGGTAAACTTTTAGTAGGAATAGGTTATCAGAATTCAGATGCAGAAAGGCCAG 909 |||||||||| |||||| ||||||||||||||||||||||||| |||| ||||||| ||| Sbjct 986 CCAGTAATGGAAAACTTATAGTAGGAATAGGTTATCAGAATTCGGATGTAGAAAGGTCAG 1045 Query 910 AAATTCCGTCACCTGGCTTACATCCAACAAGAGATGACAAGAACTTTAACTATACAAAAT 969 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1046 AAATTCCGTCACCTGGCTTACATCCAACAAGAGATGACAAGAACTTTAACTATACAAAAT 1105 Query 970 CACCCTCCACAACGGAATCCGTGAACAAAATGATGGCTCAGCCAATGAAACGATCCGAAC 1029 ||||||||||||| |||||||||||||||||| |||||||||| ||||||||| |||||| Sbjct 1106 CACCCTCCACAACTGAATCCGTGAACAAAATGTTGGCTCAGCCTATGAAACGACCCGAAC 1165 Query 1030 TGAAGTTAGATTGGCCAAAACCTCAGCAATCTGCTGCTTTGGCTGATAAAAGGTGGCCA- 1088 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1166 TGAAGTTAGATTGGCCAAAACCTCAGCAATCTGCTGCTTTGGCTGATAAAAGGTGGCCAC 1225 Query 1089 -AAC-ACGGGACAGGTTCCTTCTGCTTCTTACTCCTTGCCATCATCGCCATCGCCGTCAC 1146 ||| || |||||||||||||| ||||||||||| ||||||||||||||||| ||||||| Sbjct 1226 CAACCACAGGACAGGTTCCTTCGGCTTCTTACTCTTTGCCATCATCGCCATCACCGTCAC 1285 Query 1147 CTCAGCCTGCTGTGAGGGTTGAAGCTCGATATTTAGCTAGTGGAAATGAATTTAAGAACC 1206 ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 1286 CTCAGCCTGCTGTGAGGGTCGAAGCTCGCTATTTAGCTAGTGGAAATGAATTTAAGAACT 1345 Query 1207 -CC--cagcagcagcagcagccagcaAATAGAGAATCAATCATGGTGATGAGGCAGCGGC 1263 || ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| Sbjct 1346 TCCAGCAGCAGCAGCAGCAGCCTGCAAATAGAGAATCAGTCATGGTGATGAGGCAGCGGC 1405 Query 1264 CACAAGTTGTAAGCACAAATCCTGTTCCAACCTCAAGCATGAGCGCACCCCCTACCAGTT 1323 |||| ||||||| ||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 1406 CACAGGTTGTAATCACAAATCCCGTTCCAACCTCAAGCATGAGTGCACCCCCTACCAGTT 1465 Query 1324 GGCATCCTACAGCTG-GCATAGAGATAATGAAGTCAAATGGGTTCATGCAAACACATAAT 1382 |||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1466 GGCATCCTGCAGC-GAGCATAGAGATAATGAAGTCAAATGGGTTCATGCAAACACATAAT 1524 Query 1383 ATCCCTAGTGCGCGAAGCCCGAGTCCAAACCATCTGAATCCAAATCAGATCTACCAGCAA 1442 |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 1525 ATCCCTAGTGCGCGAAGCCCAAGTCCAAACCATCTGAATCCAAATCAGGTCTACCAGCAA 1584 Query 1443 CTTCAGTTTCAAAACCAGAAGCGATTCACTAACAACAACCAAGTGGATCCACATGGTAGT 1502 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1585 CTTCAGTATCAAAACCAGAAGCGATTCACTAACAACAACCAAGTGGATCCACATGGTAGT 1644 Query 1503 ATGGCCAGAGGGAATGGCGGGTCA-TGGACCAGAAACACAGCATCATCTCCACCCATATC 1561 ||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||| Sbjct 1645 ATGGCCAGAGGGAATGGCGGG-CAATGGACTAGAAATACAGCATCATCTCCACCCATATC 1703 Query 1562 TGCTGCGTCTTCACTGGGATTATTTTCTGTGGTTGGTTCAGCCGGAACATCAGGTGCATC 1621 |||||||||||| ||||||||||| |||| |||||||||||| |||||||| |||||||| Sbjct 1704 TGCTGCGTCTTCGCTGGGATTATTCTCTGCGGTTGGTTCAGCTGGAACATCGGGTGCATC 1763 Query 1622 CTCACCAATAGATTGGATCTCTGGCGGTTCAGTGGACTACACAAGCATAGACTGGAGTCT 1681 ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1764 TTCACCTATAGATTGGATCTCTGGCGGTTCAGTGGACTACACAAACATAGACTGGAGTCT 1823 Query 1682 AGATCAAGGTTTATCCCAAAATAGTAGA---AA------CTGGTCAGGGTTAAAGAGCAG 1732 ||||||| ||||||| |||||||||||| || |||||| |||||||||||||| Sbjct 1824 AGATCAAAGTTTATCACAAAATAGTAGAGTCAATGGAAACTGGTCCGGGTTAAAGAGCAG 1883 Query 1733 CAGCCACATATATGATGCA-AACATGAACAGGTACAGTCCAAATGGTTCCATGGGAGGTA 1791 |||||| |||||||||| | ||||||||| ||||||||| |||||||||||||||||||| Sbjct 1884 CAGCCAAATATATGATG-AGAACATGAACCGGTACAGTCTAAATGGTTCCATGGGAGGTA 1942 Query 1792 GAGTCAACAACAGCAACGGTGTATCTATGGAGAATGCGGGTGTTAGTGTTGTCGTGGAAA 1851 || |||||||||||||||||||||||||||||||| | |||| | ||||| ||||||||| Sbjct 1943 GACTCAACAACAGCAACGGTGTATCTATGGAGAATTCAGGTGCTGGTGTTATCGTGGAAA 2002 Query 1852 CACAACAAGCAGCTACCTCTCAAGATTGGACTTCACCATTTGAAGGAAAAGATATATTTA 1911 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 2003 CACAACAAGCAGCTACCTCTCCAGATTGGACTTCACCATTTGAAGGAAAAGATATCTTTA 2062 Query 1912 GCTTGTCTAGACAATATGTGTCTCCTTCTCTGTAAGAGCAGAGGAGTTACATATGG 1967 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 2063 GCTTGTCTAGACAATATGTGTCTCCTTCTCTGTAAGAGCATAGGAGTTTCATATGG 2118 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97439257845 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5