BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933024

Length=497
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G26975.1 | Symbols:  | Ctr copper transporter family | chr2:...   579    1e-164


> AT2G26975.1 | Symbols:  | Ctr copper transporter family | chr2:11512861-11513553 
FORWARD LENGTH=693
Length=693

 Score =  579 bits (313),  Expect = 1e-164
 Identities = 416/463 (90%), Gaps = 17/463 (4%)
 Strand=Plus/Plus

Query  3    TCAGAAACTTATCATACAATGGATCATGGTAACATGCATAACATGCCACCACCACTATCA  62
            |||||||||||||||| |||||||||| |      |  |||||||||||||   | ||||
Sbjct  114  TCAGAAACTTATCATATAATGGATCAT-G------G--TAACATGCCACCA--TC-ATCA  161

Query  63   CCATCATCATCAATGGCGAATCAAACCAATTCCGACATGATCGTGATGCATATGACCTTC  122
             |  ||||||||||||  ||||| ||||||||| |||||||| ||||||||||||| |||
Sbjct  162  -C--CATCATCAATGGTAAATCATACCAATTCCAACATGATCATGATGCATATGACTTTC  218

Query  123  TTCTGGGGCAAGAACACGGAGATCCTCTTCTCCGGCTGGCCCGGGACAAGTTC-CCGCAT  181
            |||||||| |||||||||||||| |||||||||||||||||||||||||| || | ||||
Sbjct  219  TTCTGGGGAAAGAACACGGAGATACTCTTCTCCGGCTGGCCCGGGACAAG-TCTCGGCAT  277

Query  182  GTATGCTCTATGTCTCATCGTCGTCTTCCTCCTCGCTGTAATCACCGAGTGGCTTGCCCA  241
            ||| | ||||||||||||||||||||||||||| ||||| |||  |||||||||||||||
Sbjct  278  GTACGTTCTATGTCTCATCGTCGTCTTCCTCCTTGCTGTTATCGTCGAGTGGCTTGCCCA  337

Query  242  TTCTTCGATCCTTCGTGGCCGTGGCTCCACCAGCCGCGCCGCGGGGCTCGCTCAGACCGC  301
            |||||||||||||||||| ||||||||||| |||||||||  |||||||| |||||||||
Sbjct  338  TTCTTCGATCCTTCGTGGACGTGGCTCCACTAGCCGCGCCAAGGGGCTCGTTCAGACCGC  397

Query  302  CGTGTACACACTCAAGACAGGCCTCGCGTATCTCGTGATGCTGGCCGTTATGTCCTTTAA  361
             || |||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct  398  AGTCTACACACTCAAGACAGGCCTTGCTTATCTCGTGATGCTCGCCGTTATGTCCTTTAA  457

Query  362  CGGCGGTGTTTTCATTGTCGCTATCGCCGGATTCGCCGTTGGTTTCATGCTCTTCGGAAG  421
            ||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  458  CGGTGGAGTTTTCATTGTCGCTATCGCCGGATTCGCCGTGGGTTTCATGCTCTTCGGAAG  517

Query  422  CACTGCTTTCAAGAACCCCTCTGATGACGAGAAACCCTTCGAA  464
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct  518  CACTGCTTTCAAGAACCCCTCTGATGACGAGAAACCCTTCGAA  560



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23710517384


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5