BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg933062 Length=271 Score E Sequences producing significant alignments: (Bits) Value AT3G58010.1 | Symbols: PGL34 | plastoglobulin 34kD | chr3:21475... 351 1e-96 > AT3G58010.1 | Symbols: PGL34 | plastoglobulin 34kD | chr3:21475805-21477569 REVERSE LENGTH=1177 Length=1177 Score = 351 bits (190), Expect = 1e-96 Identities = 237/259 (92%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 13 CTTCTTCAATGGCATTGATCCAACATGCTTTGGTTTCTGGGACCTCTGCGGTTCGATTGA 72 ||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 99 CTTATTCAATGGCATTGATCCAACATGGTTCGGTTTCTGGGACCTCTGCGGTTCGATTGA 158 Query 73 GCTTATCATCCTCCGTATCACCAACGTCGTCTTCTCCTCCGCCGTCAAGGGTCTCTCTCC 132 |||| |||||||| ||||||||| |||||||||||||||| | ||||||||| |||||| Sbjct 159 GCTTCTCATCCTCTGTATCACCACCGTCGTCTTCTCCTCCACTGTCAAGGGTTTCTCTC- 217 Query 133 AATTT-CAGTCGGAGAAGAAGAGTTGTTGCCGGAGAATGATATGCAGAAG-TATGGTTCA 190 ||||| |||||||||||||||||||||| ||||||||||||||||||| | ||||||||| Sbjct 218 AATTTTCAGTCGGAGAAGAAGAGTTGTTACCGGAGAATGATATGCAGA-GCTATGGTTCA 276 Query 191 AGACGCCGTTCAAGTAATTCCTTCGGTTTACGCCAGAGAAAATAGAGCGTCTCTCTGCTA 250 |||| | ||||||| |||||||| |||||||||||||||| | |||||||||||||||| Sbjct 277 AGACTCGGTTCAAGGGATTCCTTCAGTTTACGCCAGAGAAA-TGGAGCGTCTCTCTGCTA 335 Query 251 AGGAATCACTTATTCTCGC 269 ||||||| ||||||||||| Sbjct 336 AGGAATCGCTTATTCTCGC 354 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12416134003 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5