BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933211
Length=703
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28190.1 | Symbols: CSD2, CZSOD2 | copper/zinc superoxide di... 1020 0.0
> AT2G28190.1 | Symbols: CSD2, CZSOD2 | copper/zinc superoxide
dismutase 2 | chr2:12014498-12016569 FORWARD LENGTH=967
Length=967
Score = 1020 bits (552), Expect = 0.0
Identities = 649/694 (94%), Gaps = 13/694 (2%)
Strand=Plus/Plus
Query 11 AGCAGCAGCCATGGCTGCCACCAACACCAtcctcgcattctcatcaccttctcgtctcct 70
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 41 AGCAGCAGCCATGGCTGCCACCAACACAATCCTCGCATTCTCATCTCCTTCTCGTCTTCT 100
Query 71 cattcctccttcctccaatccctcttcttctccccatctccgttcctctttccgcggcgt 130
|||||||||||||||||| || | | || | ||||||||||||||||||||||||
Sbjct 101 CATTCCTCCTTCCTCCAA----TC--C-T-TCAAC-TCTCCGTTCCTCTTTCCGCGGCGT 151
Query 131 ctctctcAACAACAACAACAACCTCCACCGTCCCCAATCCGTTTCCTTCTCCACCAGAGC 190
|||||| |||||||||||| |||||||||| |||||| ||||||||| || | |||
Sbjct 152 CTCTCT---CAACAACAACAATCTCCACCGTCTCCAATCTGTTTCCTTCGCCGTTAAAGC 208
Query 191 TCCATCGAAAGCCTTGACAGTTGTTTCCGCCGCGAAGAAAGCTGTTGCAGTGCTCAAAGG 250
||| |||||||| ||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 209 TCCGTCGAAAGCGTTGACAGTTGTTTCCGCGGCGAAGAAGGCTGTTGCAGTGCTTAAAGG 268
Query 251 TACTTCCGTTGTCGAAGGAGTTGTTACTTTGACCCAAGATGATTCAGGTCCTACAACTGT 310
|||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 269 TACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGGTCCTACAACTGT 328
Query 311 GAATGTTCGTATCACCGGTCTCACTCCAGGGCCTCATGGATTTCACCTCCATGAGTTTGG 370
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 329 GAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATGGATTTCATCTCCATGAGTTTGG 388
Query 371 TGATACAACTAATGGATGTATCTCAACAGGACCACATTTTAACCCTAATAACATGACACA 430
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 389 TGATACAACTAATGGATGTATCTCAACAGGACCACATTTCAACCCTAACAACATGACACA 448
Query 431 CGGAGCTCCTGAAGATGAGTGCCGTCATGCGGGTGACCTGGGAAACATAACTGCCAATGC 490
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 449 CGGAGCTCCAGAAGATGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGC 508
Query 491 CGATGGCGTGGCAGAAACAACACTAGTGGACAATCAGATTCCTCTGACTGGTCCTAATTC 550
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 509 CGATGGCGTGGCAGAAACAACAATAGTGGACAATCAGATTCCTCTGACTGGTCCTAATTC 568
Query 551 TGTTGTTGGAAGAGCCTTTGTGGTTCACGAGCTTAAGGATGACCTTGGAAAGGGTGGCCA 610
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 569 TGTTGTTGGAAGAGCCTTTGTGGTTCACGAGCTTAAGGATGACCTCGGAAAGGGTGGCCA 628
Query 611 TGAGCTTAGTCTGACCACTGGAAACGCAGGCGGGAGATTGGCATGTGGTGTGATTGGCTT 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 TGAGCTTAGTCTGACCACTGGAAACGCAGGCGGGAGATTGGCATGTGGTGTGATTGGCTT 688
Query 671 GACGCCGCTCTAAGTCTG-GGCTAAGTAAGCACT 703
|||||||||||||||| | ||||||| ||| |||
Sbjct 689 GACGCCGCTCTAAGTCAGAGGCTAAGCAAGTACT 722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34058751666
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5