BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933344
Length=1421
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28800.1 | Symbols: ALB3 | 63 kDa inner membrane family prot... 2211 0.0
> AT2G28800.1 | Symbols: ALB3 | 63 kDa inner membrane family protein
| chr2:12356364-12359252 REVERSE LENGTH=1788
Length=1788
Score = 2211 bits (1197), Expect = 0.0
Identities = 1335/1401 (95%), Gaps = 12/1401 (1%)
Strand=Plus/Plus
Query 20 CTCCAATGGCGAGAGTTCTAGTCTCGTCTCCCTCTTCATTCTTCGGTTCACCGTTGATTA 79
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 90 CTCCAATGGCGAGAGTTCTAGTCTCGTCTCCATCTTCATTCTTCGGTTCACCGTTGATTA 149
Query 80 AACCGTCGTCGTCTCTCCGTCAC-----AGT----GGAGGAGG-A--GCTCAATTTCTAC 127
|||||||||| |||||||||||| ||| |||||||| | ||||||||||| |
Sbjct 150 AACCGTCGTCATCTCTCCGTCACAGTGGAGTAGGAGGAGGAGGAACCGCTCAATTTCTTC 209
Query 128 CATACCGGAGTAATAATAACAAGCTTTTCACTACTTCAACCACCGTACGATTCAGCTTAA 187
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 210 CATACCGGAGTAATAATAACAAACTCTTCACTACTTCAACCACCGTACGATTCAGCTTAA 269
Query 188 ACGAGATTCCTCCTTTCCATGGATTGGATTCATCGGTAGACATCGGAGCGATTCTCACCA 247
|||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||
Sbjct 270 ACGAGATTCCTCCTTTCCATGGCTTGGATTCATCTGTAGACATCGGAGCGATTTTCACCA 329
Query 248 GAGCTGAGTCTCTTCTTTATACTATAGCTGACGCCGCCGTTGTTGGTGCTGATTCCGTCG 307
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 330 GAGCTGAATCTCTTCTCTATACAATAGCTGACGCCGCCGTTGTTGGTGCTGATTCCGTCG 389
Query 308 TTTCTACTGATTCCTCCGCCGTGCAGAAGAGTGGTGGTTGGTTTGGTTTTATCTCCGATG 367
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 TAACTACTGATTCATCCGCCGTGCAGAAGAGTGGTGGTTGGTTTGGTTTTATCTCCGATG 449
Query 368 CTATGGAATTGGTTCTTAAGATTTTGAAGGATGGATTATCAGCGGTTCATGTACCGTATG 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 450 CTATGGAATTGGTTCTTAAGATTTTGAAGGATGGATTATCAGCGGTTCATGTACCTTATG 509
Query 428 CTTATGGATTTGCGATTATCTTGCTTACGATTATCGTCAAAGCAGCGACTTATCCTTTGA 487
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 510 CTTATGGATTTGCGATTATCTTGCTTACGATTATCGTCAAAGCAGCGACGTATCCTTTGA 569
Query 488 CTAAGCAACAGGTTGAATCGACACTAGCGATGCAAAATCTTCAACCGAAAATCAAAGCGA 547
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 570 CTAAGCAACAGGTTGAATCAACACTAGCGATGCAAAATCTTCAACCGAAAATCAAAGCGA 629
Query 548 TTCAACAACGTTACGCAGGGAATCAGGAGAGAATACAACTAGAGACATCGCGCTTGTATA 607
||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 630 TTCAACAACGTTACGCAGGAAATCAGGAGAGGATACAACTAGAGACATCGCGATTGTATA 689
Query 608 AACAAGCTGGTGTAAATCCATTGGCAGGTTGCTTACCAACTTTAGCTACCATACCAGTTT 667
||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 690 AACAAGCTGGTGTTAATCCGTTGGCAGGTTGCTTACCAACTTTAGCAACCATACCAGTTT 749
Query 668 GGATTGGTTTATACCAAGCTCTCTCCAACGTGGCCAACGAGGGATTGTTTACAGAAGGTT 727
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 750 GGATTGGTTTATACCAAGCTCTCTCTAACGTGGCCAACGAGGGATTGTTTACAGAAGGTT 809
Query 728 TCTTTTGGATTCCCTCTCTGGGTGGACCAACAACTATAGCTGCTCGGCAGAGTGGATCCG 787
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 810 TCTTTTGGATTCCATCTCTGGGTGGACCAACATCTATAGCTGCTCGGCAGAGTGGATCCG 869
Query 788 GCATATCATGGCTTTTTCCGTTTGTGGACGGGCATCCACCATTGGGATGGAATGACACTG 847
|||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 870 GCATTTCGTGGCTTTTTCCGTTTGTGGACGGGCATCCACCATTGGGATGGTATGACACTG 929
Query 848 CAGCTTATCTTGTTCTACCTGTTCTCCTTATTGCCTCCCAATATGTGTCAATGGAGATTA 907
|||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 930 TAGCTTATCTTGTTCTACCTGTTCTACTTATTGCCTCCCAGTATGTGTCAATGGAAATTA 989
Query 908 TGAAGCCTCCTCAAACAGATGATCCTGCCCAAAAGAATACGCTTCTTGTTTTCAAGTTTC 967
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 990 TGAAGCCTCCTCAAACTGATGATCCTGCACAGAAGAATACGCTTCTTGTTTTCAAGTTTC 1049
Query 968 TTCCACTCATGATCGGATACTTTGCATTGTCTGTCCCATCAGGATTATCTATCTACTGGT 1027
|||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1050 TTCCACTCATGATCGGTTACTTTGCATTGTCTGTCCCATCAGGACTATCTATTTACTGGC 1109
Query 1028 TCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACTTGGTGGTGCAA 1087
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1110 TCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACTAGGTGGTGCAA 1169
Query 1088 AGCCTAATATGGATGAAAACGCAAGCAAAATAATAAGTGCGGGACGGGCAAAGAGATCTA 1147
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1170 AGCCAAATATGGATGAAAACGCAAGCAAAATAATAAGTGCGGGACGAGCAAAGAGATCTA 1229
Query 1148 TTGCTCAGCCTGACGATGCTGGCGAAAGATTTAGACAACTAAAAGAGCAAGAGAAGCGTA 1207
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1230 TTGCTCAGCCTGACGATGCTGGCGAAAGATTTAGACAATTAAAAGAGCAAGAGAAGCGCA 1289
Query 1208 GCAAGAAGAACAAGGCTGTTGCAAAAGATACAGTTGAATTGGTAGAAGAATCTCAGTCTG 1267
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1290 GCAAGAAGAACAAGGCGGTTGCGAAAGATACAGTTGAATTGGTAGAAGAATCTCAGTCTG 1349
Query 1268 AATCAGAAGAAGGGTCTGATGATGAGGAAGAAGAGGCTCGCGAAGGAGCATTAGCTTCAA 1327
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 1350 AATCAGAAGAAGGGTCTGATGATGAGGAAGAAGAGGCTCGTGAAGGAGCGTTAGCTTCGA 1409
Query 1328 GCACTACAAGCAAGCCGCTTCCTGACGTTGGGCAACGAAGAAGCAAAAGATCAAAGCGGA 1387
|||| |||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 1410 GCACAACAAGCAAGCCGCTTCCTGAGGTTGGCCAACGAAGAAGCAAAAGATCGAAGCGGA 1469
Query 1388 AACGCACTGTATAGAACCAAA 1408
|||||||||||||||||||||
Sbjct 1470 AACGCACTGTATAGAACCAAA 1490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70029760275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5