BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg933369 Length=868 Score E Sequences producing significant alignments: (Bits) Value ATCG01310.1 | Symbols: RPL2.2 | ribosomal protein L2 | chrC:152... 712 0.0 ATCG00830.1 | Symbols: RPL2.1 | ribosomal protein L2 | chrC:843... 712 0.0 ATCG01300.1 | Symbols: RPL23.2 | ribosomal protein L23 | chrC:1... 521 3e-147 ATCG00840.1 | Symbols: RPL23.1, RPL23 | ribosomal protein L23.1... 521 3e-147 > ATCG01310.1 | Symbols: RPL2.2 | ribosomal protein L2 | chrC:152806-154312 FORWARD LENGTH=825 Length=825 Score = 712 bits (385), Expect = 0.0 Identities = 389/391 (99%), Gaps = 0/391 (0%) Strand=Plus/Plus Query 361 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 60 Query 421 CAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGGCAGCATCATTGTGGTAAAGGT 480 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 61 CAAGTGAAATCCAATCCACGAAATAATTTGATCTGTGGGCAGCATCATTGTGGTAAAGGT 120 Query 481 CGTAATGCCAGAGGAATAATTACCGCAAGGCATAGAGGGGGAGGTCATAAGCGTCTATAC 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CGTAATGCCAGAGGAATAATTACCGCAAGGCATAGAGGGGGAGGTCATAAGCGTCTATAC 180 Query 541 CGTAAAATAGATTTTCGACGAAATGCAAAAGACATATATGGTAGAATCGTAACCATAGAA 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CGTAAAATAGATTTTCGACGAAATGCAAAAGACATATATGGTAGAATCGTAACCATAGAA 240 Query 601 TACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGA 300 Query 661 TATATTTTACATCCTAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTT 720 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTT 360 Query 721 CCTATAAAAATGGGAAATGCCCTACCTTTGA 751 ||||||||||||||||||||||||||||||| Sbjct 361 CCTATAAAAATGGGAAATGCCCTACCTTTGA 391 > ATCG00830.1 | Symbols: RPL2.1 | ribosomal protein L2 | chrC:84337-85843 REVERSE LENGTH=825 Length=825 Score = 712 bits (385), Expect = 0.0 Identities = 389/391 (99%), Gaps = 0/391 (0%) Strand=Plus/Plus Query 361 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 60 Query 421 CAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGGCAGCATCATTGTGGTAAAGGT 480 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 61 CAAGTGAAATCCAATCCACGAAATAATTTGATCTGTGGGCAGCATCATTGTGGTAAAGGT 120 Query 481 CGTAATGCCAGAGGAATAATTACCGCAAGGCATAGAGGGGGAGGTCATAAGCGTCTATAC 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CGTAATGCCAGAGGAATAATTACCGCAAGGCATAGAGGGGGAGGTCATAAGCGTCTATAC 180 Query 541 CGTAAAATAGATTTTCGACGAAATGCAAAAGACATATATGGTAGAATCGTAACCATAGAA 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CGTAAAATAGATTTTCGACGAAATGCAAAAGACATATATGGTAGAATCGTAACCATAGAA 240 Query 601 TACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGA 300 Query 661 TATATTTTACATCCTAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTT 720 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTT 360 Query 721 CCTATAAAAATGGGAAATGCCCTACCTTTGA 751 ||||||||||||||||||||||||||||||| Sbjct 361 CCTATAAAAATGGGAAATGCCCTACCTTTGA 391 > ATCG01300.1 | Symbols: RPL23.2 | ribosomal protein L23 | chrC:152506-152787 FORWARD LENGTH=282 Length=282 Score = 521 bits (282), Expect = 3e-147 Identities = 282/282 (100%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 61 ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAAT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAAT 60 Query 121 CAATATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CAATATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAA 120 Query 181 CTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAA 180 Query 241 AGAATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AGAATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAA 240 Query 301 CCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA 342 |||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA 282 > ATCG00840.1 | Symbols: RPL23.1, RPL23 | ribosomal protein L23.1 | chrC:85862-86143 REVERSE LENGTH=282 Length=282 Score = 521 bits (282), Expect = 3e-147 Identities = 282/282 (100%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 61 ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAAT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAAT 60 Query 121 CAATATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CAATATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAA 120 Query 181 CTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAA 180 Query 241 AGAATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AGAATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAA 240 Query 301 CCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA 342 |||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA 282 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42347385921 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5