BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg933395 Length=2627 Score E Sequences producing significant alignments: (Bits) Value AT2G29210.1 | Symbols: | splicing factor PWI domain-containing... 1810 0.0 > AT2G29210.1 | Symbols: | splicing factor PWI domain-containing protein | chr2:12558051-12562348 FORWARD LENGTH=2922 Length=2922 Score = 1810 bits (980), Expect = 0.0 Identities = 1201/1304 (92%), Gaps = 30/1304 (2%) Strand=Plus/Plus Query 1335 AAGATTGCCTTCACCACCGGCTGA-GC--AAAGG-TTGCCTTCACCACCCGCTGGGCAAA 1390 ||| |||||||||||||| || | || ||| || |||||||||||| ||| ||||| Sbjct 1479 AAGGTTGCCTTCACCACCCCCT-AGGCGTGCAGGATTACCTTCACCACCCCCTGCGCAAA 1537 Query 1391 GGTTACCTCCACCACTCCCTAGGCGTGCAGGATTACCTTCGCCAATGAGGGTTGGAGGAT 1450 |||| ||| |||||| |||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 1538 GGTTGCCTTCACCACCCCCTAGGCGTGCAGGATTACCTTCACCAATGAGGATTGGAGGAT 1597 Query 1451 CTCATGCAGCCAATCACCTGGAATCACCATCACCCAGACCCAGTTCACTGTCCCCTCCTG 1510 ||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| Sbjct 1598 CTCATGCAGCCAATCACCTGGAATCACCATCACCCAG---C---TCATTGTCCCCTCCTG 1651 Query 1511 GTAGGAAAAAAGTGTTACCATCTCCACCTGTTAGAAGACGTAGGTCACTGACACCTG-CT 1569 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 1652 GTAGGAAAAAAGTGTTACCATCTCCACCTGTTAGAAGACGCAGGTCACTGACACCTGAC- 1710 Query 1570 GAAGAGCGAGTCTCCCTGTCACCAGCTGGACGCCATGAAGCAGAATCCCCTTCACATGTC 1629 |||||||||||||||||||||| || |||||||||| | | |||||||||||| || Sbjct 1711 GAAGAGCGAGTCTCCCTGTCACAAGGTGGACGCCAT--A-C---TTCCCCTTCACATATC 1764 Query 1630 AAGCAAGGTGGATCTACGTCACCTGCTAGGGGTCAAGGTAAATCTTC-CCCT-A-CTCGA 1686 ||||||| |||||||| |||||||| |||||||| |||||||||||| || | | ||||| Sbjct 1765 AAGCAAGATGGATCTATGTCACCTGTTAGGGGTCGAGGTAAATCTTCTCCTTCATCTCGA 1824 Query 1687 CATCAGAAAGCGCGCTCTCCTGTTCGGCGCAGATCACCAACTCCTGTCAACCGGCGAAAT 1746 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 1825 CATCAGAAAGCGCGCTCTCCTGTTCGGCGCAGATCACCAACACCTGTCAACCGGCGAAGT 1884 Query 1747 CGAAGAT-TTCCATCTGCTTCACGATCACCTGATTACAGACGTAGGAGACGGTCTCCATC 1805 ||||||| || |||||||||||||||||||||| | ||||| ||||||||||||||||| Sbjct 1885 CGAAGATCTT-CATCTGCTTCACGATCACCTGA-T--AGACGCAGGAGACGGTCTCCATC 1940 Query 1806 TTCGAGCAGGTCTCCTTCTAGGTCTCGATCACCTCCTGTTCTTCATAGATCTCCTTCTCC 1865 ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1941 TTCGAGCAGATCTCCTTCTAGGTCGCGATCACCTCCTGTTCTTCATAGATCTCCTTCTCC 2000 Query 1866 ATGTGGAAGAAAACATCAGAGGGACAGAAGATCGCCTGGGCATCTATCTGAAGAACAAGA 1925 | ||||||||||||||||||| || |||||||| ||||||| |||||||||||||||||| Sbjct 2001 ACGTGGAAGAAAACATCAGAGAGAGAGAAGATCTCCTGGGCGTCTATCTGAAGAACAAGA 2060 Query 1926 TAGGGTTCAAAATTCGAAGCTGTTAAAGAGAACTTCAGTGCCTGATACTGACAAGAGGAA 1985 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2061 TAGGGTTCAAAATTCCAAGCTGTTAAAGAGAACTTCAGTGCCTGATACTGACAAGAGGAA 2120 Query 1986 ACAATTACCAGAGGAGGTGTTAGAAGTTGGGCGTGTCGACCATTATAGGGAGCAAGAGAG 2045 ||||||||||||| || || |||||||||||||||| || ||||||| |||||| ||||| Sbjct 2121 ACAATTACCAGAGAAGTTGCTAGAAGTTGGGCGTGTAGAACATTATAAGGAGCAGGAGAG 2180 Query 2046 AAAGAGTGATAAGTTGACAGAGAGGCGTTCCGGTCATAGAAC-CCATGGTTCACAGATGT 2104 |||||||||||||||| |||||| ||| || | ||| || || ||||||||||||||||| Sbjct 2181 AAAGAGTGATAAGTTGTCAGAGAAGCGATCTGTTCACAG-ACACCATGGTTCACAGATGT 2239 Query 2105 CCCCAGTAGAAAATTCAGAAGGAAAGAGTCGGCCTGTTTCTGGTAAAGTGAAAGACAGTG 2164 |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 2240 CCCCAGTAGAAAATTCAGAAGGAAGGAGTCGGCCTGTTTCTAGTAAAGTGAAAGACAGTG 2299 Query 2165 AGCAGGTTGAGAAAGATGATAACAGCGACCTGGATGCAAACCTTTCCTCTGATTCTAAGG 2224 |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2300 AGCAGGTTGAGAAAGAGGATAACAGCGACCTGGATGCAAACCTTTCCTGTGATTCTAAGG 2359 Query 2225 AAAGCAGCAGACATCGAACTAAGGATAAAAAGAGAAGAAAGAATAAAAGGTCTTCGAGGG 2284 | | || |||||||| || |||||||||||| ||||||||||||||||||||||| |||| Sbjct 2360 ATACCATCAGACATCAAATTAAGGATAAAAATAGAAGAAAGAATAAAAGGTCTTCAAGGG 2419 Query 2285 AAGAAGTATCTTCAGATGATAATGGCAGTTCTGATTCTGACCTAGATGATaggaaggagg 2344 ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 2420 AAGAAGTATCTTCAGATGATAATGGCAGTTCTGATTCCGACGTAGATGATAGGAAGGAGG 2479 Query 2345 ctaaaaggaggaggaaggaggagaagaaaacgagaaaggaggagaagaaacgtaggcgag 2404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2480 CTAAAAGGAGGAGGAAGGAGGAGAAGAAAACGAGAAAGGAGGAGAAGAAACGTAGGCGAG 2539 Query 2405 aggagagaCGTCGTAAAAGGGAAGAACGTCGTGGTGGAAAGGAGAAACATAAGAATCGAG 2464 ||||||||| |||||||||||||||||||||||||||||||||||| |||||||| | || Sbjct 2540 AGGAGAGACATCGTAAAAGGGAAGAACGTCGTGGTGGAAAGGAGAAGCATAAGAAACAAG 2599 Query 2465 AGCTATCTGATACTTCAGAGGGAGAAGCTGAGGCCCGTCCTAAGAATAAAAAAGGGGAGG 2524 |||| |||||||||||||| || |||| ||||||||||||||||| |||||||||||||| Sbjct 2600 AGCTTTCTGATACTTCAGAAGGTGAAGTTGAGGCCCGTCCTAAGATTAAAAAAGGGGAGG 2659 Query 2525 AGTCTGATCCAAAGAGGCTTGAAATTGAGTTGCGAAACAAAGCACTCGAGTCATTGAAAG 2584 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2660 AATCTGATCCAAAGAGGCTTGAAATTGAGTTGCGAAACAAAGCACTCGAGTCATTGAAAG 2719 Query 2585 CAAAGAAGGGCATCAGCCACTAAGTCC-TTATCCAGCGTTATTT 2627 ||||||||||||| ||||||||||||| || ||||||||||||| Sbjct 2720 CAAAGAAGGGCATTAGCCACTAAGTCCCTTGTCCAGCGTTATTT 2763 Score = 1779 bits (963), Expect = 0.0 Identities = 1313/1471 (89%), Gaps = 68/1471 (5%) Strand=Plus/Plus Query 1 TGCTTCCACAAACCCTAAACTATGTCCGGCGGTTTCTTCCGGGGTACTTCCGCCGAGCAG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 85 TGCTTCCACAAACCCTAAACTATGTCCGGCGGTTTCTTCCGGGGTACTTCCGCCGAGCAG 144 Query 61 GATACTCGGTTTTCTAACAAGCAAGCCAAATTGATGAAGAGTCAGAAATTTGCTCCGGAG 120 |||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| Sbjct 145 GATACTCGGTTTTCTAACAAGCAAGCTAAATTGATGAAAAGCCAGAAATTTGCTCCGGAG 204 Query 121 TTGGAGAATCTGGTGGATGTGACTAAAGTGAAGATGGATGTAATGAAGCCTTGGATTGCG 180 || ||||||||||||||| | |||||||||||||||||||| ||||| |||||||||||| Sbjct 205 TTAGAGAATCTGGTGGATATCACTAAAGTGAAGATGGATGTTATGAAACCTTGGATTGCG 264 Query 181 ACTAGAGTCACTGAGCTTCTTGGTTTTGAAGATGAAGTGCTGATTAACTTTATCTATGGT 240 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 265 ACTAGAGTCACTGAGCTTCTTGGTATTGAAGATGAAGTGCTGATTAACTTTATCTATGGT 324 Query 241 CTGCTTGATGGGAAGGTAGTGAACGGTAAGGAGATTCAGATATCGTTAACTGGATTCATG 300 |||||||| |||||||||||||| |||||||||||||||||| || |||||||||||||| Sbjct 325 CTGCTTGACGGGAAGGTAGTGAATGGTAAGGAGATTCAGATAACGCTAACTGGATTCATG 384 Query 301 GAGAAAAATACTGGCAAGTTTATGAAAGAACTTTGGACACTTCTTCTAAGCGCACAGAAT 360 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 385 GAGAAAAATACTGGCAAATTTATGAAAGAACTTTGGACACTTCTTCTAAGCGCACAGAAT 444 Query 361 AATTCAAGTGGTGTTCCACAGCAGTTTTTAGATGCTAGAGAAGCTGAAACAAAGAAGAAA 420 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 445 AATCCAAGTGGTGTTCCACAGCAGTTTTTAGATGCTAGAGCTGCTGAAACAAAGAAGAAA 504 Query 421 CAGGAAGAAGCAATACAAAAAGCAGATCGGTTAGCAAATGAAATAGAGAGGAAGAGGGAG 480 |||||||||| | | | | | | |||| ||| || | |||||||||| Sbjct 505 CAGGAAGAAG-----C----A--A-A-----T-G-AAAT--AAT-GA-A-GAAGAGGGAG 540 Query 481 GGAGAAAAGAAGAACCCTGAGCATGATATATTGAGGAAAATAGACAGCGGCGTAGAACAC 540 ||||| ||||||||| |||||| |||||||||||||||||||||||||| |||||||| Sbjct 541 GGAGATAAGAAGAACATTGAGCACGATATATTGAGGAAAATAGACAGCGGTGTAGAACAT 600 Query 541 AAGGAGACAAATGGCATGGATACAAAACCTTCAAGAGATCGTCCAGAGGATGGGAGAAGG 600 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 601 AAGGAGACAAATGGCATGGATGCAAAACCTTCAAGAGATCGTCCAGAGGATGGGAGAAGG 660 Query 601 GCTGACGAGAAGAATGGTGTGAAAGAAAGGAGAAGGGATCTGATACCTCCACGTGGCAGA 660 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| || || Sbjct 661 GCTGACGAGAAGAATGGTGTAAAAGAAAGGAGAAGGGATCTGATACCTCCACGTCGCGGA 720 Query 661 GATGCATCCCGCTCACCCCTTAGGGGGTCACGTTCTAGGTCAATCAGCAAAACAAATTCA 720 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 721 GATGCATCCCGCTCACCCCTTAGAGGGTCACGTTCTAGGTCAATCAGCAAAACAAATTCA 780 Query 721 GGCTCGAAAAGTTATTCTGGTGAACGGAAATCCAGGAGCTTGTCTCAATCATCAGATGCC 780 |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 781 GGCTCGAAAAGTTATTCTGGCGAACGGAAATCCAGGAGCACATCTCAATCATCAGATGCC 840 Query 781 TCCATCTCACCTAGAAAGCGGAGATTGTCGAATTCAAGACGTAGATCCAGATCACGTTCC 840 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 841 TCCATCTCACCTAGAAAGCGAAGATTGTCGAATTCAAGACGTAGATCCAGATCACGTTCC 900 Query 841 TTGCGTAGGTCTCTATCTCCTCGGCGACGTACGATACATTCTCCTTAT-GGAAGCAGGTC 899 ||||||||||||| |||||||||||||||| |||||| ||||||| | |||||||||| Sbjct 901 GTGCGTAGGTCTCTGTCTCCTCGGCGACGTAGGATACACTCTCCTT-TCAGAAGCAGGTC 959 Query 900 ACGGTCACCTATTAGACGTCACAGGCGACATACGCCTGAGGGACGCCGTCAATCACCAGC 959 |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 960 GCGGTCACCTATTAGACGTCACAGGCGACCTACGCATGAGGGACGCCGTCAATCACCAGC 1019 Query 960 CCCTTCAAGGCGTCGCCGTTCTCCATCCCCACCTGCTAGGA-GGCGCAGGTCACCATTCC 1018 ||||||||| |||||||||||||||||||||||||||| || ||||||||||||||| || Sbjct 1020 CCCTTCAAGACGTCGCCGTTCTCCATCCCCACCTGCTA-GACGGCGCAGGTCACCATCCC 1078 Query 1019 CACCTTCTAGGA-GGCGCAGGTCACCATCCCCACCTGCTAGGA-GGCGCAGGTCACCATC 1076 ||||| ||| || |||||||||||||||| |||||||||| || ||| |||||| ||| | Sbjct 1079 CACCTGCTA-GACGGCGCAGGTCACCATCACCACCTGCTA-GACGGCACAGGTCTCCAAC 1136 Query 1077 ACCACCTGTTA-G-A---C--G--------G----C-G-TA-G-GTCACCG---TCC-CC 1109 |||||||| | | | | | | | | || | ||||||| ||| || Sbjct 1137 ACCACCTGCAAGGCAGCGCAGGTCACCATCGCCCCCTGCTAGGCGTCACCGTTCTCCACC 1196 Query 1110 ACCTGCTAGGCCGCGCAGGTCACCATCGCCCCCTGCTAGGCGTCG-CCGT-T-CTCCACT 1166 || ||||||| ||| ||||| || || || || |||||||| || || | || ||| Sbjct 1197 GCCAGCTAGGCGGCGTAGGTCTCCTTCACCGCCAGCTAGGCGGCGTAGGTCTCCTTCACC 1256 Query 1167 GCCCTTTAGGCGGCGTAGGTCTCCTTCACCGC-C-AGCTAGGCGGCGCAGGTCTCCATCT 1224 ||| |||||||||||||||||| || || | | | | ||||| ||||||||||||| Sbjct 1257 GCCAGCTAGGCGGCGTAGGTCTCCATCTCCACTCTA-C-AGGCGTAACAGGTCTCCATCT 1314 Query 1225 CCACTCTATAGTCGTAACAGGTCACTGTCACCACTGGTTAAGCGGGAAAGGTCTGACTCA 1284 ||||||||||| ||||||||||||| |||||| |||| |||||||| ||||||||||||| Sbjct 1315 CCACTCTATAGGCGTAACAGGTCACGGTCACCGCTGGCTAAGCGGGGAAGGTCTGACTCA 1374 Query 1285 CAAGGGAGGTCTCCGTCACCAGTGGCTAGGCGCAGGGATCCCACTGGGGCAAGATTGCCT 1344 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1375 CCAGGGAGGTCTCCGTCACCAGTGGCTAGGCTCAGGGATCCCACTGGGGCAAGATTGCCT 1434 Query 1345 TCACCA-CCGGCTGAGCAAAGGTTGCCTTCACCACCCGCTGGGCAAAGGTTACCTCCACC 1403 |||||| || ||||||||| |||||||||||||||| || |||||||| ||| |||| Sbjct 1435 TCACCATCCAT-TGAGCAAAGATTGCCTTCACCACCCGTTGCACAAAGGTTGCCTTCACC 1493 Query 1404 ACTCCCTAGGCGTGCAGGATTACCTTCGCCA 1434 || |||||||||||||||||||||||| ||| Sbjct 1494 ACCCCCTAGGCGTGCAGGATTACCTTCACCA 1524 Score = 270 bits (146), Expect = 4e-71 Identities = 190/211 (90%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 1012 CCATTCCCACCTTCTAGGA-GGCGCAGGTCACCATCCCCACCTGCTAGGA-GGCGCAGGT 1069 |||| ||||||| ||| || ||||||||||||||||||||||||||| || ||||||||| Sbjct 1042 CCATCCCCACCTGCTA-GACGGCGCAGGTCACCATCCCCACCTGCTA-GACGGCGCAGGT 1099 Query 1070 CACCATCACCACCTGTTAGACGGCGTAGGTCACCGTCCCCACCTGCTAGGCCGCGCAGGT 1129 ||||||||||||||| |||||||| ||||| || | |||||||| |||| |||||||| Sbjct 1100 CACCATCACCACCTGCTAGACGGCACAGGTCTCCAACACCACCTGCAAGGCAGCGCAGGT 1159 Query 1130 CACCATCGCCCCCTGCTAGGCGTCGCCGTTCTCCACTGCCCTTTAGGCGGCGTAGGTCTC 1189 |||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| Sbjct 1160 CACCATCGCCCCCTGCTAGGCGTCACCGTTCTCCACCGCCAGCTAGGCGGCGTAGGTCTC 1219 Query 1190 CTTCACCGCCAGCTAGGCGGCGCAGGTCTCC 1220 |||||||||||||||||||||| |||||||| Sbjct 1220 CTTCACCGCCAGCTAGGCGGCGTAGGTCTCC 1250 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 130434051800 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5