BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933488

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G30000.1 | Symbols:  | PHF5-like protein | chr2:12803853-128...   531    2e-150


> AT2G30000.1 | Symbols:  | PHF5-like protein | chr2:12803853-12804977 
REVERSE LENGTH=642
Length=642

 Score =  531 bits (287),  Expect = 2e-150
 Identities = 336/360 (93%), Gaps = 2/360 (1%)
 Strand=Plus/Plus

Query  6    CACTGTTTTGGT-AGCTATGGCGAAGCATCACCCTGATTTGATCATGTGCAGGAAACAAC  64
            |||||||   || ||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct  104  CACTGTTCCAGTAAGCCATGGCGAAGCATCACCCTGATTTGATCATGTGCCGGAAACAAC  163

Query  65   CCGGAATTGCCATTGGACGACTGTGTGAGAAATGCGACGGGAAATGTGTGATTTGTGATT  124
            |||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct  164  CCGGAATTGCTATTGGACGACTGTGTGAGAAATGCGATGGGAAATGCGTGATTTGTGATT  223

Query  125  CTTATGTGCGTCCATGTACTCTGGTACGTATTTGTGATGAATGCAACTACGGGTCATTCC  184
            ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  224  CTTATGTGCGTCCGTGTACTCTAGTACGTATTTGTGATGAATGCAACTACGGGTCATTCC  283

Query  185  AAGGTCGGTGTGTGATATGCGGAGGGGTTGGAATCTCCGATGCTTATTACTGTAAAGAGT  244
            ||||||||||||| |||||||| || ||||||||||| |||||||||||||| |||||||
Sbjct  284  AAGGTCGGTGTGTTATATGCGGTGGCGTTGGAATCTCAGATGCTTATTACTGCAAAGAGT  343

Query  245  GTACGCAACAAGAGAAAGACAGAGATGGTTGCCCCAAGATTGTTAACCTTGGGAGTGCGA  304
            |||| || || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  344  GTACACAGCAGGAGAAAGACAGAGATGGTTGCCCCAAGATTGTTAACCTTGGCAGTGCGA  403

Query  305  AAACCGATCTGTTCTATGAACGTAAGAAATACGGATTCAAAAAACGATGATATTT-GGTA  363
            |||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct  404  AAACCGATCTCTTCTATGAACGCAAGAAATACGGATTCAAAAAACGATGATAGTTCGGTA  463



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17593712150


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5