BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg933543 Length=348 Score E Sequences producing significant alignments: (Bits) Value AT2G30424.1 | Symbols: TCL2 | Homeodomain-like superfamily prot... 446 8e-125 AT2G30420.1 | Symbols: ETC2 | Homeodomain-like superfamily prot... 248 2e-65 AT5G53200.1 | Symbols: TRY | Homeodomain-like superfamily prote... 183 7e-46 > AT2G30424.1 | Symbols: TCL2 | Homeodomain-like superfamily protein | chr2:12964506-12965468 REVERSE LENGTH=303 Length=303 Score = 446 bits (241), Expect = 8e-125 Identities = 286/307 (93%), Gaps = 5/307 (2%) Strand=Plus/Plus Query 23 ATGGATAACACCAACCGTCTTCGTCTCCTTCGCAGTCCTAAGCAAACCAAGTTCACTCTA 82 ||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| Sbjct 1 ATGGATAACACCAACCGTCTTCGTCACCTTCGCAGTCGTAAGCAATCCAAGTTCACTCTA 60 Query 83 CGTGACT-CCGAAGAGGTAAGTAGTGTGAAATGGGAGTTTACCAATATGACGGAACAAGA 141 | || | ||| |||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 61 GGGGA-TACCGCAGAGGTAAATAGTGTGAAATGGGAGTTTATCAATATGACGGAACAAGA 119 Query 142 AGAAGATCTCATCTTTCGAATGCACAGACTTGTTGGTGATAGGTGGGATTTAATAGCAGG 201 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 AGAAGATCTCATCTTTCGAATGCACAGACTTGTTGGTGATAGGTGGGATTTAATAGCAGG 179 Query 202 AAGAGTGGTAGGACGAGAGGCAAAAGACATAGAGAGATACTGGATTATGAGAAACTGTGA 261 |||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct 180 AAGAGTGGTAGGACGAGAGGCAAAGGACATAGAAAGATATTGGATTATGAGAAACTGTGA 239 Query 262 CCATTGTTCCAACAAACGACGCCGCCGATTCCACAAACTTTCCCGTTTCTCTATTTCTCC 321 ||||||||| ||||||||||||| | | ||||||| ||| |||||||||||||||||| Sbjct 240 TCATTGTTCCCACAAACGACGCCGA-G-T-CCACAAATTTTACCGTTTCTCTATTTCTCC 296 Query 322 TCCTTAA 328 ||||||| Sbjct 297 TCCTTAA 303 > AT2G30420.1 | Symbols: ETC2 | Homeodomain-like superfamily protein | chr2:12960827-12962162 REVERSE LENGTH=696 Length=696 Score = 248 bits (134), Expect = 2e-65 Identities = 230/274 (84%), Gaps = 16/274 (6%) Strand=Plus/Plus Query 23 ATGGATAACACCAACCGTCTTCG---TC-TC-C-TTCGCAGTCCTAAGCAAACCAAGTTC 76 |||||||| |||||||||||||| || || | || ||||| || |||||| |||||| Sbjct 248 ATGGATAATACCAACCGTCTTCGTCTTCGTCGCGGTCCCAGTCTTAGGCAAACTAAGTTC 307 Query 77 ACTC--T-ACG---TGACTCCGAAGAGGTAAGTAGTGT-GAAATGGGAGTTTACCAATAT 129 |||| | || |||||| ||||| || ||||| | | |||||||||||| || ||| Sbjct 308 ACTCGATCCCGATATGACTCTGAAGAAGTGAGTAGCATCG-AATGGGAGTTTATCAGTAT 366 Query 130 GACGGAACAAGAAGAAGATCTCATCTTTCGAATGCACAGACTTGTTGGTGATAGGTGGGA 189 ||| |||||||||||||||||||||| ||||||| |||||||||| ||| |||||||||| Sbjct 367 GACCGAACAAGAAGAAGATCTCATCTCTCGAATGTACAGACTTGTCGGTAATAGGTGGGA 426 Query 190 TTTAATAGCAGGAAGAGTGGTAGGACGAGAGGCAAAAGACATAGAGAGATACTGGATTAT 249 |||||||||||||||||| |||||| || ||||||| || || ||||||||||||||||| Sbjct 427 TTTAATAGCAGGAAGAGTCGTAGGAAGAAAGGCAAATGAGATTGAGAGATACTGGATTAT 486 Query 250 GAGAAACTGTGACCATTGTTC-CAACAAACGACG 282 |||||||| |||| ||| ||| || ||||||||| Sbjct 487 GAGAAACTCTGACTATTTTTCTCA-CAAACGACG 519 > AT5G53200.1 | Symbols: TRY | Homeodomain-like superfamily protein | chr5:21582774-21584145 FORWARD LENGTH=645 Length=645 Score = 183 bits (99), Expect = 7e-46 Identities = 176/213 (83%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 52 TCGCAGTCCTAAGCAAAC-CAAGTTCACTCTACGTGACTCCGAAGAGGTAAGTAGTGT-G 109 |||| ||| ||||| ||| ||| || | || | |||||| ||||| || || ||| | | Sbjct 160 TCGCCGTCGTAAGC-AACACAAAATCGCCCTCCATGACTCTGAAGAAGTGAGCAGTATCG 218 Query 110 AAATGGGAGTTTACCAATATGACGGAACAAGAAGAAGATCTCATCTTTCGAATGCACAGA 169 |||||||||||| ||| ||||| |||||||||||||||||||||||||||||| ||||| Sbjct 219 -AATGGGAGTTTATCAACATGACTGAACAAGAAGAAGATCTCATCTTTCGAATGTACAGA 277 Query 170 CTTGTTGGTGATAGGTGGGATTTAATAGCAGGAAGAGTGG-TAGGACGAGAGGCAAAAGA 228 ||||| ||||||||||||||||| |||||||||||||| | ||| || | || | || Sbjct 278 CTTGTCGGTGATAGGTGGGATTTGATAGCAGGAAGAGTTCCT-GGAAGACAACCAGAGGA 336 Query 229 CATAGAGAGATACTGGATTATGAGAAACTGTGA 261 ||||||||||| ||||| ||||||||| |||| Sbjct 337 GATAGAGAGATATTGGATAATGAGAAACAGTGA 369 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16286750676 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5