BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933639
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31070.1 | Symbols: TCP10 | TCP domain protein 10 | chr2:132... 1663 0.0
AT1G53233.1 | Symbols: | other RNA | chr1:19850031-19852127 FO... 134 2e-30
AT1G53230.1 | Symbols: TCP3 | TEOSINTE BRANCHED 1, cycloidea an... 134 2e-30
> AT2G31070.1 | Symbols: TCP10 | TCP domain protein 10 | chr2:13220478-13222609
REVERSE LENGTH=2017
Length=2017
Score = 1663 bits (900), Expect = 0.0
Identities = 1051/1121 (94%), Gaps = 22/1121 (2%)
Strand=Plus/Plus
Query 1 TCATTTTGAAAGGTAACAAAA-AATGGGACTTAAAGGTTATAGCGTCGGAGAAGGAGGAG 59
|||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 518 TCATTTTGAAAGGTAAAAAAATAATGGGACTTAAAGGATATAGCGTCGGAGAAGGAGGAG 577
Query 60 GAGAGATAGTTGAGGTTCAAGGCGGTCATATAATCCGAGCCACGGGACGCAAAGATCGCC 119
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |
Sbjct 578 GAGAGATAGTTGAGGTTCAAGGCGGTCACATAATCCGAGCCACTGGACGCAAAGACCGTC 637
Query 120 ATAGCAAAGTCTTCACATCAAAGGGTCCACGTGACCGGCGCGTGAGACTCTCAGCTCACA 179
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 ATAGCAAAGTGTTCACATCAAAGGGTCCACGTGACCGGCGCGTGAGACTCTCAGCTCACA 697
Query 180 CGGCGATTCAATTCTACGATGTGCAAGACCGGTTAGGGTATGACCGGCCTAGCAAAGCCG 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 698 CGGCGATTCAATTCTACGATGTGCAAGACCGGTTAGGTTATGACCGGCCTAGCAAAGCCG 757
Query 240 TAGATTGGCTCATCAAGAAAGCCAAAACCGCCATCGATAAGCTCGAAATCGGGGAGACTA 299
| ||||||||||||||||||||||||||||| || |||||||| ||| ||||||||||||
Sbjct 758 TTGATTGGCTCATCAAGAAAGCCAAAACCGCTATTGATAAGCTTGAACTCGGGGAGACTA 817
Query 300 CTACTACTA-T--TCGTCAAGAACCTGTGAATACTAAACCGGAATCTCCCAATTTGGTTT 356
||||||||| | |||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 818 CTACTACTACTACTCGTCAAGAACCGGTGAATACTAAACCGGAATCTCCCACTTTGGTTT 877
Query 357 TCCAAAGAGAAAATAATGACCAAACGCAGCAAACACAGTTTGTGGCGGCCAATCTTGATT 416
|||||||||| || |||||||||| | | ||||| ||||||||||||||||||
Sbjct 878 TCCAAAGAGAGAACAATGACCAAA--C-G------CAGTTCGTGGCGGCCAATCTTGATC 928
Query 417 CTGAAGACGCAATGAAAACGTTTTTTCCTGCGACGACAACAACAAAC-G-GG-GGTGGTT 473
||||||||||||||||||||||||| || |||||||||||||||||| | || ||||||
Sbjct 929 CTGAAGACGCAATGAAAACGTTTTTCCCGGCGACGACAACAACAAACGGTGGTGGTGGTA 988
Query 474 CAAACATGAATTTCCAAAACTACCCCCATCATGATGACGACAACATGGTCTCAAGAACAA 533
||||||| ||||||||||||||||| ||||| |||||| |||||||||||||||||||||
Sbjct 989 CAAACATCAATTTCCAAAACTACCCTCATCAGGATGACAACAACATGGTCTCAAGAACAA 1048
Query 534 CAACAACAACACCGAACCTTAGCCAAGATCTTGGTCTCTCTCTTCACCCATTCCAAGGAA 593
||||| || |||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1049 CAACACCACCACCAAACCTTAGCCAAGATCTTGGTCTCTCTCTTCACCCATTTCAAGGGA 1108
Query 594 ACAACAACACAGTCGTAGTCCCCGAGAACAACAATTTCACCACGAATCATTTCGACACAT 653
||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||| |
Sbjct 1109 ACAACAACACAGTCGTAGTTCCCGAGACCAACAATTTCACCACGACTCATTTCGACACGT 1168
Query 654 TCGGGAGAATCTCTGGATGGAATCATCCCGACTTAACGATGACGTCATCATCCTCATTAG 713
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||
Sbjct 1169 TCGGGAGAATCTCTGGATGGAATCATCACGACTTAACTATGACGTCATCATCCTCATCAG 1228
Query 714 AACATCAACAACAAGAACAAGAAGAAAGGAGTAACGGTGGATTCATGGTGAatcatca-- 771
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1229 AACATCAACAACAAGAACAAGAAGAAAGGAGTAATGGTGGTTTCATGGTGAATCATCATC 1288
Query 772 -tcatcatcatcagcatcaACCGTCGATGATGACATTGCTTAATAGTCAGCAACAACAAG 830
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 CTCACCATCATCATCATCAACCGTCGATGATGACATTGCTTAATAGTCAGCAACAACAAG 1348
Query 831 TGTTTCTTGGTGGCCATCAACAACAACAACAAAGGGGTACCCTTCAGTCCAGTTTATTCC 890
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 TGTTTCTTGGTGGCCAACAACAACAACAACAAAGGGGTACCCTTCAGTCCAGTTTATTCC 1408
Query 891 CTCATTCGTTTCGTTCTTGGGATCATCATCAAACGGTGTCGGATCATCATCATCA---GA 947
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1409 CTCATTCGTTTCGTTCTTGGGATCATCATCAAACGACGTCGGATCATCATCATCATCAGA 1468
Query 948 ATCAAGCTTCTTCGATGTTTGCTTCATCATCACAGTTTGGTTCTCATGGGATGATGATGA 1007
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1469 ATCAAGCTTCTTCGATGTTTGCTTCATCATCACAGTATGGTTCTCATGGGATGATGATGA 1528
Query 1008 TGCAAGGCCTTAGTTTCCCCAACACTACAAGACTACTCCATGGAGAAGAATCTACTCAAC 1067
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1529 TGCAAGGCCTTAGTTTCCCCAACACTACAAGACTACTCCACGGAGAAGAAGCTACTCAAC 1588
Query 1068 CAAACTCTTCTTCTTCTCCTCCAAACTCACACCTCTAAACT 1108
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1589 CAAACTCTTCTTCTTCTCCTCCAAACTCACACCTCTAAACT 1629
> AT1G53233.1 | Symbols: | other RNA | chr1:19850031-19852127
FORWARD LENGTH=1938
Length=1938
Score = 134 bits (72), Expect = 2e-30
Identities = 174/222 (78%), Gaps = 12/222 (5%)
Strand=Plus/Minus
Query 62 GAGATAGTTGAGGTTCAAGGCGGTCATATAATCCGAG-CCACGGGACGCAAAGATC-GCC 119
||||| || ||||| ||||| ||||| || | || | | || ||| | ||||| | | |
Sbjct 1147 GAGATTGTGGAGGTACAAGGAGGTCACATTGTTCG-GTCAACAGGAAGAAAAGA-CAGAC 1090
Query 120 ATAGCAAAGTCT-TCACATC-AAAGGGTCCACGTGACCGGCGCGTGAGACTCTCAGCTCA 177
|||| ||||| | | ||| | ||| || |||||||||||||||||||||||||||||||
Sbjct 1089 ATAGTAAAGTATGT-ACAGCGAAA-GGACCACGTGACCGGCGCGTGAGACTCTCAGCTC- 1033
Query 178 C-ACGGCGATTCAATTCTACGATGTGCAAGACCGG-TTAGGGTATGACCGGCCTAGCAAA 235
| ||||||||||||||||||||||| ||||| | || || | ||| || || || |||
Sbjct 1032 CGACGGCGATTCAATTCTACGATGTTCAAGATAGACTT-GGTTTTGATCGACCAAGTAAA 974
Query 236 GCCGTAGATTGGCTCATCAAGAAAGCCAAAACCGCCATCGAT 277
|| || |||||||| || | ||||| ||| ||||||| |||
Sbjct 973 GCTGTTGATTGGCTTATTACTAAAGCTAAATCCGCCATTGAT 932
> AT1G53230.1 | Symbols: TCP3 | TEOSINTE BRANCHED 1, cycloidea
and PCF transcription factor 3 | chr1:19849788-19851725 REVERSE
LENGTH=1844
Length=1844
Score = 134 bits (72), Expect = 2e-30
Identities = 174/222 (78%), Gaps = 12/222 (5%)
Strand=Plus/Plus
Query 62 GAGATAGTTGAGGTTCAAGGCGGTCATATAATCCGAG-CCACGGGACGCAAAGATC-GCC 119
||||| || ||||| ||||| ||||| || | || | | || ||| | ||||| | | |
Sbjct 390 GAGATTGTGGAGGTACAAGGAGGTCACATTGTTCG-GTCAACAGGAAGAAAAGA-CAGAC 447
Query 120 ATAGCAAAGTCT-TCACATC-AAAGGGTCCACGTGACCGGCGCGTGAGACTCTCAGCTCA 177
|||| ||||| | | ||| | ||| || |||||||||||||||||||||||||||||||
Sbjct 448 ATAGTAAAGTATGT-ACAGCGAAA-GGACCACGTGACCGGCGCGTGAGACTCTCAGCTC- 504
Query 178 C-ACGGCGATTCAATTCTACGATGTGCAAGACCGG-TTAGGGTATGACCGGCCTAGCAAA 235
| ||||||||||||||||||||||| ||||| | || || | ||| || || || |||
Sbjct 505 CGACGGCGATTCAATTCTACGATGTTCAAGATAGACTT-GGTTTTGATCGACCAAGTAAA 563
Query 236 GCCGTAGATTGGCTCATCAAGAAAGCCAAAACCGCCATCGAT 277
|| || |||||||| || | ||||| ||| ||||||| |||
Sbjct 564 GCTGTTGATTGGCTTATTACTAAAGCTAAATCCGCCATTGAT 605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5