BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg933714 Length=705 Score E Sequences producing significant alignments: (Bits) Value AT2G31680.1 | Symbols: AtRABA5d, RABA5d | RAB GTPase homolog A5... 1072 0.0 AT1G06400.1 | Symbols: ARA2, ATRABA1A, ATRAB11E, ARA-2 | Ras-re... 110 3e-23 AT5G45750.1 | Symbols: AtRABA1c, RABA1c | RAB GTPase homolog A1... 76.8 3e-13 > AT2G31680.1 | Symbols: AtRABA5d, RABA5d | RAB GTPase homolog A5D | chr2:13473594-13475052 REVERSE LENGTH=942 Length=942 Score = 1072 bits (580), Expect = 0.0 Identities = 647/680 (95%), Gaps = 2/680 (0%) Strand=Plus/Plus Query 8 AGAAATCAGaaaaaaaCGATGTCGTCCGATGACGAAGGAGGAGAGGAGTATCTCTTCAAG 67 ||||| || ||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 80 AGAAA-CA-AAAAAAACGATGTCGTCCGATGACGAAGGAGGAGAAGAGTATCTATTCAAG 137 Query 68 ATAGTGATCATCGGCGACTCTGCCGTCGGGAAATCGAACCTTCTCTCTCGCTACGCTCGT 127 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 138 ATAGTGATAATCGGCGACTCTGCCGTCGGGAAATCGAACCTTCTCTCTCGCTATGCTCGT 197 Query 128 AACGAGTTCAACGCTCATTCCAAAGCCACGATCGGCGTCGAGTTCCAAACGCAAAACATG 187 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||| Sbjct 198 AACGAGTTCAACGCTCATTCCAAGGCCACGATCGGCGTCGAGTTCCAGACGCAGAATATG 257 Query 188 GAGATCGAAGGAAAAGAGGTTAAAGCTCAGATTTGGGATACTGCTGGTCAGGAACGGTTC 247 || |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 258 GAAATCGAAGGTAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAACGGTTT 317 Query 248 CGTGCCGTCACTTCCGCTTATTATCGCGGCGCCGTCGGAGCTCTCGTCGTTTACGATATT 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 318 CGTGCCGTCACTTCCGCTTATTATCGCGGCGCCGTCGGAGCTCTCGTCGTTTACGATATT 377 Query 308 AGCCGTCGATCCACGTTTGAGAGCGTTGGTCGTTGGCTTGATGAGCTTAAGACACATTCG 367 || |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 378 AGTCGTCGATCCACGTTTGAGAGTGTTGGTCGTTGGCTTGATGAGCTCAAGACACATTCG 437 Query 368 GATACAACAGTTGCGAGGATGCTGGTGGGAAACAAATGCGATCTAGAAAGCATAAGAGCG 427 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 438 GATACAACGGTTGCGAGGATGCTGGTGGGAAACAAATGCGATCTAGAAAGCATAAGAGCG 497 Query 428 GTGAGCGTGGAGGAAGGCAAAGCACTAGCGGAAACCGAAGGACTATTCTTCATGGAAACA 487 ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 498 GTGAGCGTGGAAGAAGGCAAAGCACTAGCTGAAACCGAAGGACTATTTTTCATGGAAACA 557 Query 488 TCAGCTCTCGATTCAACAAATGTTAAAACAGCTTTTGAAATGGTAATCCGTGACATCTAC 547 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 558 TCAGCTCTCGATTCAACAAATGTTAAAACAGCTTTCGAAATGGTAATCCGTGACATCTAT 617 Query 548 ACCAATGTTAGCCGGAAACAACTCAATTCCGACACTTATAAAACCGAACTAAGCATGAAG 607 |||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 618 ACCAATATAAGCCGGAAACAACTCAACTCCGACACTTATAAAACCGAACTAAGCATGAAA 677 Query 608 AACCGAGTAAGTCTCGTTAAGGACGATAACAAAGGGTCCACACAAGGCTTTGGTTTCTCT 667 ||| |||| |||||||||||||||||||| ||| | |||||||||||||||||||||||| Sbjct 678 AACAGAGTCAGTCTCGTTAAGGACGATAATAAAAGCTCCACACAAGGCTTTGGTTTCTCT 737 Query 668 TGCTGTTCTTCCTCGTGACC 687 |||||||||||||||||||| Sbjct 738 TGCTGTTCTTCCTCGTGACC 757 > AT1G06400.1 | Symbols: ARA2, ATRABA1A, ATRAB11E, ARA-2 | Ras-related small GTP-binding family protein | chr1:1950844-1952785 REVERSE LENGTH=995 Length=995 Score = 110 bits (59), Expect = 3e-23 Identities = 146/186 (78%), Gaps = 14/186 (8%) Strand=Plus/Plus Query 59 CTCTTCAAGATAGTGATCATCGGCGACTCTGCCGTCGGGAAATCGAACCTTCTCTCTC-G 117 ||||||||| | ||| | ||||||||||||| ||||| |||||||| || ||||||| | Sbjct 136 CTCTTCAAGCTCGTGTTGATCGGCGACTCTGGTGTCGGCAAATCGAATCTGCTCTCTCGG 195 Query 118 CT-ACGCTCGTAACGAGTTCAACGCTC-ATTCCAAAG-CCACGATCGGCGTCGAGTTC-C 173 | || | | ||||||||||| ||| | ||| ||| | || || || || |||||| | Sbjct 196 TTCAC-CAAG-AACGAGTTCAA-TCTCGAATCC-AAGTCTACTATTGGTGTTGAGTTCGC 251 Query 174 AAACGCAAAA-CA-TGGAGATCGAAGGAAAAGAGGTTAAAGCTCAGATTTGGGATACTGC 231 || ||||| || | || ||||||| |||| || ||||||||||||||||||||||| Sbjct 252 -TAC-CAAAACCACTAAAG-TCGAAGGCAAAGTCGTCAAAGCTCAGATTTGGGATACTGC 308 Query 232 TGGTCA 237 |||||| Sbjct 309 TGGTCA 314 > AT5G45750.1 | Symbols: AtRABA1c, RABA1c | RAB GTPase homolog A1C | chr5:18559116-18560842 FORWARD LENGTH=1056 Length=1056 Score = 76.8 bits (41), Expect = 3e-13 Identities = 108/140 (77%), Gaps = 6/140 (4%) Strand=Plus/Plus Query 209 AAAGCTCAGATTTGGGATACTGCTGGTCAGGAACGGTTCCGTGCCGTCACTTCCGCTTAT 268 ||||||||||||||||||||||||||||| ||| ||| ||| ||| ||||| || ||| Sbjct 389 AAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTACCGAGCCATCACTAGTGCGTAT 448 Query 269 TATCGCGGCGCCGTCGGAGCTCT-CGTCGTTTACGATATTAGCCGTCGA-TCCACGTTTG 326 || || || || || ||||| || | | || |||||| | | ||| | | || || |||| Sbjct 449 TACCGAGGAGCTGTTGGAGCGCTTCTT-GTCTACGATGTAACCCGAC-ACTCAACATTTG 506 Query 327 AGAGCGTTG-GTCGTTGGCT 345 | | ||||| | | |||||| Sbjct 507 AAAACGTTGAGAC-TTGGCT 525 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34159219960 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5