BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933932
Length=474
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33450.1 | Symbols: | Ribosomal L28 family | chr2:14173579-... 721 0.0
AT1G04457.1 | Symbols: | Pseudogene of AT2G33450; 50S ribosoma... 333 9e-91
> AT2G33450.1 | Symbols: | Ribosomal L28 family | chr2:14173579-14174533
FORWARD LENGTH=626
Length=626
Score = 721 bits (390), Expect = 0.0
Identities = 441/465 (95%), Gaps = 6/465 (1%)
Strand=Plus/Plus
Query 2 GAAGTAACAGCAACCAAAAATGACGACAATGGCGACGCAAGGGGCTTGGCTACGAATGAC 61
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 23 GAAGTAACAGCAACCAAAAATGACGACAATGGCGACACAAGGCGCTTGGCTACGAATGAC 82
Query 62 CTCATCA-CCGAAGTCCGTGGCTAAGTCAACCGTGACTTCAAAGGAGCTTGGGTTCCTCA 120
||||||| || |||||| || | ||||||||||||||||||||||||||||| |||||||
Sbjct 83 CTCATCAGCC-AAGTCCATGACCAAGTCAACCGTGACTTCAAAGGAGCTTGGATTCCTCA 141
Query 121 CCTCCCAGCTCAGCGGCATAAGAATCTC-TCACGCTCCCAGTGACGTCATCAACCGTATC 179
||||||||||||||||| |||||||||| | | ||||||||||||||||||||||||||
Sbjct 142 CCTCCCAGCTCAGCGGCTTAAGAATCTCAT-ATACTCCCAGTGACGTCATCAACCGTATC 200
Query 180 TCCGTTCCTTCCTTCCCCGGGATTCAGCCAATCGTCGCACGTAGAATCTGCCCTTTTACT 239
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 TCCCTTCCTTCGTTCCCCGGGATTCAGCCAATCGTCGCACGTAGAATCTGCCCTTTTACT 260
Query 240 GGGAAGAAAGCAAACAGAGCAAACAAAGTTTCTTTCTCTAACCACAAGACCAAGAAGTTG 299
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 261 GGGAAGAAAGCAAACAGAGCAAACAAAGTTTCATTCTCTAACCACAAGACCAAGAAGTTG 320
Query 300 CAATTCGTCAACTTACAATACAAGAGAGTTTGGTGGGAAGCTGGCAAACGTTTTGTCAAA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 CAATTCGTCAACTTACAATACAAGAGAGTTTGGTGGGAAGCTGGCAAACGTTTTGTCAAA 380
Query 360 CTTCGTTTATCAACTAAGGCTTTGAAGACCATTGAGAAAAACGGACTTGATGCTGTTGCC 419
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 381 CTTCGTTTATCAACTAAGGCTTTGAAGACCATTGAGAAGAACGGACTCGACGCTGTTGCC 440
Query 420 AAGAAAGCCGGCATAGACCTTCGCAAGAAATAGCTAATTGATGAT 464
|||||||||||||| || ||||||||||||||| || | ||||||
Sbjct 441 AAGAAAGCCGGCATTGATCTTCGCAAGAAATAGATA-T-GATGAT 483
> AT1G04457.1 | Symbols: | Pseudogene of AT2G33450; 50S ribosomal
protein L28, chloroplast (CL28) | chr1:1210319-1210549 REVERSE
LENGTH=231
Length=231
Score = 333 bits (180), Expect = 9e-91
Identities = 214/231 (93%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 222 AGAATCTGCCCTTTTACTGGGAAGAAAGCAAACAGAGCAAACAAAGTTTCTTTCTCTAAC 281
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1 AGAATCTGCCCTTTTACTGGGAAGAAAGCAAACAGAGCAAACAAAGTGTCATTCTCTAAC 60
Query 282 CACAAGACCAAGAAGTTGCAATTCGTCAACTTACAATACAAGAGAGTTTGGTGGGAAGCT 341
|||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 61 CACAAGACCAAGAAGTTGCAATTCGTCAACTTGCAGTACAAAAGAGTTTGGTGGGAAGCT 120
Query 342 GGCAAACGTTTTGTCAAACTTCGTTTATCAACTAAGGCTTTGAAGACCATTGAGAAAAAC 401
|||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 121 GGCAAACGTTTTGTCATACTTCGGTTATCAACTAAGGCCTTGAAGACCATTGAGAAGAAC 180
Query 402 GGACTTGATGCTGTTGCCAAGAAAGCCGGCATAGACCTTCGCAAGAAATAG 452
|| || || |||||| |||||||||| |||||||| ||||| ||||| |||
Sbjct 181 GGTCTCGAAGCTGTTTCCAAGAAAGCTGGCATAGATCTTCGTAAGAAGTAG 231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22555132003
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5