BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933960
Length=2236
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosp... 3644 0.0
AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosp... 159 8e-38
> AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:14265450-14267972
REVERSE LENGTH=2523
Length=2523
Score = 3644 bits (1973), Expect = 0.0
Identities = 2148/2234 (96%), Gaps = 6/2234 (0%)
Strand=Plus/Plus
Query 2 AATCTCCAGCCACCCACCGATGAAGCGATCAATCAATGAAGTCGTCGGATCTACTTCCGT 61
|||||||||| | ||||||||||||||| ||||||| ||||||||||||||||| |||||
Sbjct 74 AATCTCCAGCTAACCACCGATGAAGCGAACAATCAACGAAGTCGTCGGATCTACCTCCGT 133
Query 62 CAATACTCTCGATTCCTCCGTTGGTAAGAAGCCTGTCTTCCTCACCAAAGCTCAGCGCGA 121
||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| ||
Sbjct 134 CAATACTCTCGATTCCTCCATTGCTAAGAAGCCTGTCTTCCTCACCAAAAAACAGCGGGA 193
Query 122 AGAACTAGCCCTAAAACGCCGTCAGGATCAAATCTCCGAGCAACGTGTCCGCCGCGAACA 181
||| |||||||||||||||| ||||||||||||||||||||||||||||| || || ||
Sbjct 194 AGAGTTAGCCCTAAAACGCCGCCAGGATCAAATCTCCGAGCAACGTGTCCGTCGTGAGCA 253
Query 182 GCTAGGTCGCCCCGAGCCCGAGACTGAAGATGTCTCCAATGGAGATACCAATCGGGATAA 241
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 254 ACTTGGTCGCCCCGAGCCCGAGACGGAAGATGTCTCCAATGGAGATACCAATCGGGATAA 313
Query 242 GGATCGAGATAGAGATCGGGACCGAGACCGAGAACGTGACCGCGACAGGgagagagatag 301
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 314 GGATCGAGATAGAGATCGGGACCGAGACCGAGAACGTGACCGAGATAGGGAGAGAGATAG 373
Query 302 agggcgagatcgagaccgcgatagggat--ag--a--gatagagatagagagcgagagag 355
|||||||||||||||||||||||||||| || | ||||| |||||||||||||||||
Sbjct 374 AGGGCGAGATCGAGACCGCGATAGGGATAGAGACAGGGATAGGGATAGAGAGCGAGAGAG 433
Query 356 agaCCGTGAGCGTGACCGTCGTGAACGAGATCGTGAACCGGATCGGAGAAATAGAGATAG 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 434 AGACCGTGAGCGTGACCGTCGTGAACGAGATCGTGAACCGGATCGGAGAAATAGAGAAAA 493
Query 416 GGAGAGGGAAGAGGAGGTTAAGGCTAGGGAGAAGGCGCGGGTTGAGAAATTAGTTGAGAG 475
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 494 GGAGAGGGAAGAGGAGGTTAAGGCTAGGGAGAAGGCGCGTGTTGAGAAATTAGTTGAGAG 553
Query 476 AGAGAGGGAGAAGGAACTTGACGCCATTAAAGAGCAGTATCTTGGAGGTAAGAAGCCGAA 535
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 AGAGAAGGAGAAGGAACTTGACGCCATTAAAGAGCAGTATCTTGGAGGTAAGAAGCCGAA 613
Query 536 GAAGAGAGTCATTAGGCCCAGCGAGAAGTTTCGTTTCTCTTTCGATTGGGAAAACACTGA 595
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 614 GAAGAGAGTCATTAGGCCAAGCGAGAAGTTTCGTTTCTCTTTTGATTGGGAAAACACTGA 673
Query 596 GGATACTTCTAGGGATATGAACGTTCTTTACCAAAACCCTCATGAAGCTCAGCTTCTGTT 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 674 GGATACTTCTAGGGATATGAACGTTCTTTACCAAAACCCTCATGAAGCTCAGCTTCTCTT 733
Query 656 TGGGAGAGGGTTTCGTGCTGGTATGGACCGTCGTGAGCAGAAGAAACAAGCGGCCAAGCA 715
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 734 TGGGAGAGGGTTTCGTGCTGGTATGGACCGTCGTGAGCAGAAGAAACAAGCGGCTAAGCA 793
Query 716 TGAGAAAGAGATGCGAGACGAGATTCGTAAGAAAGATGGTATTGTAGAGAGACCTGAGGA 775
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 794 TGAGAAAGAGATGCGAGACGAGATTCGTAAGAAAGATGGTATTGTAGAGAAACCAGAGGA 853
Query 776 AGCGGCTGCTCAGAGAGTTCGAGAAGAAGCTGCGGATACTTATGACTCGTTTGATATGAG 835
||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 854 AGCTGCTGCTCAGAGAGTGAGAGAAGAAGCTGCTGATACTTATGACTCGTTTGATATGAG 913
Query 836 GGTTGATAGGCATTGGAGCGATAAGAGATTAGAGGAGATGACTGAAAGGGATTGGCGTAT 895
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 914 GGTTGACAGGCATTGGAGTGATAAGAGATTAGAGGAGATGACTGAAAGGGATTGGCGTAT 973
Query 896 TTTCAGAGAAGATTTCAATATCTCTTACAAGGGTTCGAGGATTCCTCGTCCAATGAGGAG 955
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 974 TTTCAGAGAAGATTTCAATATCTCTTACAAGGGTTCGAGGATTCCTCGTCCGATGAGGAG 1033
Query 956 CTGGGAAGAGAGCAAGCTCACTTCTGAGCTTTTGAAAGCTGTAGAGAGAGCTGGATACAA 1015
|||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1034 CTGGGAAGAGAGTAAGCTTACTTCTGAGCTTTTGAAAGCTGTGGAGAGAGCTGGATACAA 1093
Query 1016 GAAACCTTCTCCAATTCAAATGGCTGCTATACCTCTTGGACTGCAACAGCGTGATGTTAT 1075
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1094 GAAACCTTCTCCTATTCAAATGGCAGCTATACCACTTGGACTGCAACAGCGTGATGTTAT 1153
Query 1076 CGGCATTGCAGAGACTGGTTCTGGTAAGACTGCTGCTTTTGTTTTGCCTATGTTAGCTTA 1135
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1154 CGGCATTGCAGAGACTGGTTCTGGTAAGACTGCTGCTTTTGTTTTACCCATGTTAGCTTA 1213
Query 1136 CATCTCTAGATTGCCACCGATGAGCGAAGAGAATGAGACTGAAGGACCGTATGCTGTTGT 1195
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 1214 CATCTCTAGATTGCCACCGATGAGCGAAGAGAATGAGACTGAGGGGCCTTATGCTGTTGT 1273
Query 1196 TATGGCCCCTACTAGGGAGCTTGCTCAGCAGATTGAGGAGGAAACTGTTAAGTTTGCGCA 1255
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 TATGGCCCCTACTAGAGAGCTTGCTCAGCAGATTGAGGAGGAAACTGTTAAGTTTGCGCA 1333
Query 1256 TTATCTAGGGTTTAGGGTGACTTCTATTGTAGGTGGTCAGTCGATTGAGGAACAGGGGTT 1315
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1334 TTATCTAGGGTTTAGGGTGACTTCTATTGTGGGTGGTCAGTCGATTGAGGAACAGGGGTT 1393
Query 1316 GAAGATAACACAAGGGTGTGAGATTGTGATTGCTACTCCAGGTCGTCTGATTGATTGCCT 1375
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1394 GAAGATAACACAAGGGTGTGAGATTGTGATTGCTACTCCGGGTCGTCTGATTGATTGCCT 1453
Query 1376 TGAGAGGCGGTATGCGGTGTTGAATCAGTGTAACTACGTGGTTCTTGATGAGGCAGATCG 1435
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1454 TGAGAGGCGTTATGCGGTGTTGAACCAGTGTAACTATGTGGTTCTTGATGAGGCAGATCG 1513
Query 1436 GATGATAGACATGGGTTTCGAGCCACAGGTTGCAGGTGTGTTAGATGCGATGCCTTCAAG 1495
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1514 GATGATTGACATGGGTTTCGAGCCACAGGTTGCAGGTGTGTTAGATGCGATGCCTTCAAG 1573
Query 1496 TAATTTGAAACCTGAGAACGAAGAAGAAGAGCTTGATGAAAAGAAAATTTACAGAACCAC 1555
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 1574 TAATTTGAAACCTGAGAACGAAGAAGAAGAGCTTGATGAAAAGAAGATTTATAGAACTAC 1633
Query 1556 ATATATGTTTAGTGCTACAATGCCTCCTGGGGTAGAGCGGCTAGCTAGGAAGTACTTGAG 1615
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1634 ATATATGTTTAGTGCTACAATGCCTCCTGGGGTAGAGCGGCTAGCTCGGAAGTACTTGAG 1693
Query 1616 GAACCCGGTTGTTGTCACCATTGGTACTGCAGGAAAGACCACGGATTTGATTTCGCAACA 1675
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1694 GAACCCGGTTGTTGTCACCATTGGTACTGCTGGAAAGACTACGGATTTGATTTCGCAACA 1753
Query 1676 CGTTATTATGATGAAAGAATCAGAGAAATTCTTCAGATTGCAGAAACTGCTCGATGAGCT 1735
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1754 TGTTATTATGATGAAAGAATCAGAGAAATTCTTCAGATTGCAGAAACTGCTCGATGAGCT 1813
Query 1736 CGGCGATAAAACTGCCATTGTGTTTGTTAACACAAAGAAAAATTGTGACTCTATTGCTAA 1795
|||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1814 CGGCGAGAAGACTGCCATTGTGTTTGTTAACACAAAGAAAAATTGTGACTCGATTGCTAA 1873
Query 1796 GAATCTTGATAAGGCAGGGTACCGTGTCACGACCTTGCACGGTGGGAAATCGCAAGAGCA 1855
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1874 GAATCTGGATAAGGCAGGGTACCGTGTCACGACCTTGCACGGTGGGAAATCACAAGAGCA 1933
Query 1856 GAGAGAGATCAGCTTAGAAGGATTCAGAGCAAAGAGATACAACGTTCTTGTTGCAACAGA 1915
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1934 GAGAGAAATCAGCTTAGAAGGATTCAGAGCAAAGAGATACAACGTTCTTGTTGCAACAGA 1993
Query 1916 TGTTGTAGGTCGTGGAATCGATATTCCAGATGTGGCTCACGTCATAAACTACGACATGCC 1975
||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1994 TGTTGTAGGACGTGGAATTGATATTCCGGATGTGGCTCATGTCATAAACTACGACATGCC 2053
Query 1976 TAAACATATAGAGATGTACACACATCGTATCGGACGTACAGGACGTGCTGGGAAAAGTGG 2035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2054 TAAACATATAGAGATGTACACACATCGTATCGGACGTACAGGACGTGCTGGGAAAAGTGG 2113
Query 2036 TGTTGCGACTTCGTTCTTAACTCTTCATGATACAGAAGTCTTCTATGATCTGAAGCAGAT 2095
|||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 2114 TGTTGCGACTTCGTTCTTGACACTTCATGATACCGAAGTCTTCTATGATCTGAAGCAGAT 2173
Query 2096 GCTTGTTCAGAGCAACAGTGCGGTGCCTCCTGAGCTGGCGAGACATGAAGCATCCAGATT 2155
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2174 GCTTGTTCAGAGCAACAGTGCGGTGCCTCCTGAGCTGGCGAGACATGAAGCGTCCAGATT 2233
Query 2156 CAAACCAGGTACGGTTCCTGATAGACCCCCAAGACATAGTGACACTGTTTATATAAATTG 2215
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2234 CAAACCAGGTACGGTTCCTGATAGACCCCCAAGACATAGTGACACTGTCTATATAAATTG 2293
Query 2216 AGTCGATAGGCTCT 2229
||||||||||||||
Sbjct 2294 AGTCGATAGGCTCT 2307
> AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:9843075-9845002
REVERSE LENGTH=1854
Length=1854
Score = 159 bits (86), Expect = 8e-38
Identities = 228/292 (78%), Gaps = 27/292 (9%)
Strand=Plus/Plus
Query 454 GGGTTGAGAAATTAGTTGA-GAG-AGAGAGGGAGAAGGA-ACTTGACGCCATTAAAGAGC 510
||||||||||||||| || | | | || | ||||| || | || |||| || |||||||
Sbjct 278 GGGTTGAGAAATTAG-AGATG-GTAAAGCGTGAGAAAGAGA-TTAACGCAATGAAAGAGC 334
Query 511 AGTATCTT-GGAGGTAA-GAAGCCGAAGAAGAGAGTCAT--T-AGGCCCAGCGAGAAGTT 565
| || ||| ||| || ||||| |||||||||||||| | | ||| ||| |||| ||
Sbjct 335 AATA-CTTAGGA-ACAACAAAGCCTAAGAAGAGAGTCATCATGAAGCCGAGCAAGAA-TT 391
Query 566 TCGTTTCTCTTTCGATTGGGAAAACACTGAGGATACTTCT-A--GG-GATATGAACGTTC 621
|| | |||||||||||| |||||||| ||||||| | | || || ||||| ||||
Sbjct 392 TC----C-GTTTCGATTGGGAGAACACTGAAGATACTT-TGAGTGGAGAGATGAATGTTC 445
Query 622 TTTACCAAAACCCTCATGAAGCTCAGCTTCTGTTTGGGAGAGGGTTTCGTGCTGGTATGG 681
||||||||||||||||||||||||||| ||||||||||||||||| ||| || || || |
Sbjct 446 TTTACCAAAACCCTCATGAAGCTCAGCCTCTGTTTGGGAGAGGGTGTCGCGCGGGAATAG 505
Query 682 ACCGTCGTGAGCAGAAGAAACA-A-G-CGGCCAAGCATGAGAAAGAGATGCG 730
| || |||||||| || |||| | | ||| ||||| |||| ||||| |||
Sbjct 506 ATCGCCGTGAGCAAAAAAAACTTATGACGGGTAAGCACGAGAGAGAGAAGCG 557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110943204450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5