BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934080
Length=1663
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34810.1 | Symbols: | FAD-binding Berberine family protein ... 2604 0.0
> AT2G34810.1 | Symbols: | FAD-binding Berberine family protein
| chr2:14685256-14687062 FORWARD LENGTH=1807
Length=1807
Score = 2604 bits (1410), Expect = 0.0
Identities = 1583/1667 (95%), Gaps = 10/1667 (1%)
Strand=Plus/Plus
Query 2 CACAAATAACAAAATGAAAATGAAGTTCTGGTCACGACC---AACGTTTCTTATAATTAT 58
|||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 18 CACAAATAACAAAACGAAAATGAAGTTTTGGTCACGACCATTAACGTTTCTTATAATTAT 77
Query 59 TATCTATCTCATAACAATTAAACGAGTCAACTCATCACCACCGTCATTATCTGTACCGGA 118
|||||||||||| |||| ||| |||||||||||||||||||||||||||| |||||||
Sbjct 78 TATCTATCTCAT---AATTCAACAAGTCAACTCATCACCACCGTCATTATCTATACCGGA 134
Query 119 GCATTTTCTCCGATGTCTCGATACTCAGCCGTCCGACCACGGCAGTCCCAACTCCATAAC 178
||||||||||||||| ||||| ||||| || ||||||||||||||||||||||| | |||
Sbjct 135 GCATTTTCTCCGATGCCTCGACACTCAACCATCCGACCACGGCAGTCCCAACTCAAGAAC 194
Query 179 CGCCGTGATCCCCACAAACTCATCTTTCTCAACAAATCTAATGAATGGCGTCAGAAACCT 238
|||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 195 CGCCGTGATCCCAACAAACTCATCTTTCTCAACAAACCTAATGAACGGCGTCAGAAACCT 254
Query 239 CCGGTTCGCTTCTGCCTCCACAAGAAAACCAGAAGCCATCGTCGCCGCGGTCACCGAAAC 298
|||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 255 CCGGTTCGCTTCTGTCTCCACAAGAAAACCAGAAGTTATCGTCGCCGCCGTCACCGAAAC 314
Query 299 CCACATAAGAGCAACAATCTCCTGCTGCAAACTCTTAAACCTCGAGCTAAGAATCCGTAG 358
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||
Sbjct 315 TCACATAAGAGCAACAATCTCTTGCTGCAAACTCCTAAACCTCGAGCTAAGAATCCGAAG 374
Query 359 CGGTGGCCACGACTACGAAGGCTTCTCCTACACTTCTCCGGTACCATTCGTAATCTTAGA 418
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 375 CGGAGGCCACGACTACGAAGGCTTCTCCTACACTTCTCCGGTACCTTTCGTAATCTTAGA 434
Query 419 CATGTACAACTTCAACAAAATCGATATCAACATGAAAGACGAAACCGTTTGGATCCAATC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 CATGTACAACTTCAACAAAATCGATATCAACATGAAAGACGAAACCGTTTGGATCCAATC 494
Query 479 CGGAGCCTCACTAGGTCAGCTTTACTACAACATTGCAAGCAAAAGCAAAGTCCACGCTTT 538
|||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 495 CGGAGCTTCACTAGGTCAGCTTTACTATAACATTGCAAGTAAAAGCAAAGTCCACGCTTT 554
Query 539 TCCCGCCGGAGTTTGTCCTAAAGTCGGCGCCGGAGGACATTTTAGCGGCGGAGGATTCGG 598
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 555 TCCCGCCGGAGTTTGTCCTAAAGTCGGCGCCGGAGGACATTTCAGCGGCGGAGGATTCGG 614
Query 599 TAACCTCATGAGAAAATACGGTTTATCGATTGATCATATAATCGACGCTCAAATCATGGA 658
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 615 TAACCTCATGAGAAAATACGGTTTATCCATTGATCATATAATCGACGCTCAAATCATGGA 674
Query 659 TGCCAACGGTAAAGTCTACCGTAACCGTCAAGCTATGGGAGAAGACGTGTTTTGGGCTAT 718
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 CGCCAACGGTAAAGTGTACCGTAACCGTCAAGCTATGGGAGAAGACGTGTTTTGGGCTAT 734
Query 719 TCGCGGCGGAGGCGGCGGAAGCTACGGCGTCATTCTTGCCTGGAAGATTAAGCTCGTTAG 778
||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 735 TCGCGGCGGAGGCGGCGGAAGCTACGGAGTCATTCTTGCCTGGAAGATAAAACTCGTTAG 794
Query 779 GGTTCCGGAGAAAGTCACAGTTTTTAAACTAGAAAGAACGGTGAGAGAAGGTGCCGTTGA 838
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 795 GGTTCCGGAGAAAGTCACAGTTTTTAAACTAGAAAGAACGGTGAGAGAAGGAGCCGTTGA 854
Query 839 TTTAGTCCATAAATGGCAAGAAGTAGCTCCGGTTATCGATAGAGATTTGTTTATCCGGTT 898
|||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 855 TTTAGTTCATAAATGGCAACAAGTAGCTCCGGTTATCGACAGAGATTTGTTTATCCGGTT 914
Query 899 AGAGATTAAACCGATAAACCGGAGAATCTCTAAAGGTAAGACGATCAAAGTCTCCTTCAT 958
|||||||||||| |||||||||| |||||| |||||||||||||| ||||||||||||||
Sbjct 915 AGAGATTAAACCAATAAACCGGAAAATCTCAAAAGGTAAGACGATTAAAGTCTCCTTCAT 974
Query 959 AGGAATGTTTCTTGGTTTACCAGAGAAACTTCTT-AACATAACAAAACAGAGTTTCCCGG 1017
|||||||||||||||||||| |||| |||| || |||||||| |||||||||||||| |
Sbjct 975 CGGAATGTTTCTTGGTTTACCTGAGAGACTT-TTAAACATAACGAAACAGAGTTTCCCTG 1033
Query 1018 AGCTACATTTAACGAAATCAGATTGTGTGGTCAAGAAATGGATCGATTCTACG-GTTTTC 1076
||||||||||||||||| ||||||| ||||||||||||||||||| |||| | ||||||
Sbjct 1034 AGCTACATTTAACGAAAGAAGATTGTATGGTCAAGAAATGGATCGAATCTA-GTGTTTTC 1092
Query 1077 TGGGCGAATTACCCAGAAAAAGCACCGATAGAGATACTTAACAAAAGAGTATCAACCAAT 1136
||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1093 TGGGCGAATTATCCAGAAAAAGCACCGATAGAGTTACTTCTCAAAAGAGTATCAACCAAC 1152
Query 1137 GAATACTACTGGAAACGTACTTCAGATTTTGTTCAAACACCAATCTCAAAACAGGGTCTT 1196
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1153 GAATACTACTGGAAACGTACTTCAGATTTTGTTCAAGCACCAATCTCAAAACAGGGTCTT 1212
Query 1197 GCAAAGATTTTTCAAACAATGATTGATCATTCGCCACTTCCACGACGAGTTTGGATGCAA 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 GCAAAGATTTTTCAAACAATGATTGATCATTCGCCACTTCCACGACGAGTTTGGATGCAA 1272
Query 1257 TGGAATGCATGGGGAGGGAAAATGGGGGAGATTGCGTCTGATGCGACGCCGTTTGTGCAT 1316
|||||| |||||||||||||||||| ||||| ||||||||||||||| |||||||||||
Sbjct 1273 TGGAATCCATGGGGAGGGAAAATGGCTGAGATAGCGTCTGATGCGACGGCGTTTGTGCAT 1332
Query 1317 AGAGGTGGTAACATTTTCATGATTGAGCATTTCATGAATTGGTATAGACCTGGAGATGAG 1376
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AGAGGTGGTAATGTTTTCATGATTGAGCATTTCATGAATTGGTATAGACCTGGAGATGAG 1392
Query 1377 CTTGAAGAGAAGTTCTTGGCGATTGCAAGAAGTTTTAAAGAAGCTATGGCTCCGTTCGTT 1436
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1393 CTTGAAGAGAAGTTCTTGGCGATTGCAAGAAGTTTTAAAGAAGCTATGGCTCCGTTTGTT 1452
Query 1437 TCCAAGAATCCGAGAGAAGCTTTCTTTAATTACCGAGACGTTGATATCGGAATTACGACG 1496
|||||||||||||||||||||||||||||||| |||| || |||||||||||||| |||
Sbjct 1453 TCCAAGAATCCGAGAGAAGCTTTCTTTAATTATAGAGATGTCGATATCGGAATTACTACG 1512
Query 1497 CCGGGATATAACGCGACGTATGAAGGAGCTAAGGTTTATGGGGACAGTTATTTCAAAGGG 1556
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1513 CCGGGGTATAATGCGACGTATGAAGGAGCTAAGGTTTATGGGGATAGTTATTTCAAAGGG 1572
Query 1557 AATTATTTGAGGTTGGTTAAGATTAAAGCCCGGTTCGACCGGACTAATTTTTTCCGGTCT 1616
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 AATTATTTGAGATTGGTTAAGATTAAAGCCCGGTTCGACCGGACTAATTTTTTCCGGTCT 1632
Query 1617 CAGCAAGGGATTCCGGTTCTTGCTTAGTTTGGTGATTGGTGAGTGTT 1663
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1633 CAGCAAGGGATTCCGGTTCTTGCTTAGTTTGGTGATTGGTGAGTGTT 1679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82178292165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5