BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934176

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G35585.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   739    0.0  


> AT2G35585.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G31940.1); 
Has 67 Blast hits to 67 proteins in 17 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14936666-14937964 
FORWARD LENGTH=785
Length=785

 Score =  739 bits (400),  Expect = 0.0
 Identities = 478/514 (93%), Gaps = 11/514 (2%)
 Strand=Plus/Plus

Query  6    TAATTGAATTCAATAGCATGGTTGGTATTTTCTCCAGATTTTCTGTTGTTAGAGGCGGCC  65
            |||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct  207  TAATCGAATTCAATAGCATGGTTGGTATTTTCTCCAGGTTTTCTGTTGTTAGAGGCAGCC  266

Query  66   ATAGGA-GAACACAGAGTGCCATCGATGGCAGGGAAGTCTTGTCTCCAAGATCTGATCTT  124
            ||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  267  ATA-GACGAACACAGAGTGCCATCGATGGCAGGGAAGTATTGTCTCCAAGATCTGATCTT  325

Query  125  GCTCCTTCAGCTAACACCACAACCGCTGCAACTCATGGGATCGAAGTAGCAACAGAGTTT  184
            |||||  || |||| ||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct  326  GCTCCGGCAACTAATACCACAACCACTGAAACTCATGGGATCGAAGTAGCAACAGAGTTT  385

Query  185  AAACCGGTGGATCACCCGATGGAGCCTTTGGACAACGATCAACCGATCCAATGTCCACTC  244
            |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct  386  AAACCGGTGGATCACCCGATGGAGCCCTTAGACAACGATCAACCGATCCAATGTCCACTC  445

Query  245  CCGGAGCCATCCATTCTCAATGATGGGAGACTCTGGAAAGAGAGAGTGTCGGCTAATTCG  304
            || |||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||
Sbjct  446  CCAGAGCCATCCATTCTCAATGACGGGAGACTCTGGAAAGAGAGAGTGTCGGCTTCTTCG  505

Query  305  ATGAGGAGACG-AGATGATTTGGCGATTGCCCAAGATGGGATGGATGAAGAATCTGATGT  363
            ||||||||||| || ||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct  506  ATGAGGAGACGAAG-TGATTTGGCTATTGTCCAAGATGGGATGGATGAAGAATCTGATGT  564

Query  364  TTCTGTGA---CAATTCCATCACGGGCTAGCCAATGCAATACCAACCGTCCTATCTTGCC  420
            ||||||||   |||||||||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct  565  TTCTGTGACGTCAATTCCATCGCGGACTAGCCAATGCAATACCAACCGTCCGATCTTGCC  624

Query  421  TTCACTCAGTGCGCCCGAACACAACTTGCTTAATCTACTAGAAGAATGCAAAGTATCTGG  480
            |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct  625  TTCACTTAGTGCGCCGGAACACGACTTGCTTAATCTACTAGAAGAATGCAAAGTATCTGG  684

Query  481  TAGTATCTA---A-GAACCTGCAGGGATGGTCTA  510
            |||||||||   | ||||||||| ||||||||||
Sbjct  685  TAGTATCTAGCTAAGAACCTGCATGGATGGTCTA  718



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24363561295


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5