BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934191
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35680.1 | Symbols: | Phosphotyrosine protein phosphatases ... 1687 0.0
> AT2G35680.1 | Symbols: | Phosphotyrosine protein phosphatases
superfamily protein | chr2:14996713-14999085 REVERSE LENGTH=1800
Length=1800
Score = 1687 bits (913), Expect = 0.0
Identities = 1015/1063 (95%), Gaps = 11/1063 (1%)
Strand=Plus/Plus
Query 1 TCTCTAGATCTTTGACTGAGGAATATGTATATCGAAGAACTGACGGAAAGGGAAGAGGAG 60
||| ||||||||||||||||||||||||||||| ||||||||||||||| | || |||
Sbjct 472 TCTTTAGATCTTTGACTGAGGAATATGTATATCAAAGAACTGACGGAAA-CG--GATGAG 528
Query 61 GAGAAGGGGGAGAGATCGGTTGAGGATCACGTTGCTGATGGAGATAAGGCGATTTTGGTT 120
|||||| |||||||||||||||||||| |||||| |||||||||||||||| | |||||
Sbjct 529 GAGAAGAGGGAGAGATCGGTTGAGGATAACGTTGATGATGGAGATAAGGCGGTATTGGTG 588
Query 121 AGCAGAGGAAACGTGATTGTGTTGACTACAAAGAGGGCACTCGTTGGTGTTGGTGCTCGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 AGCAGAGGAAACGTGATTGTGTTGACTACAAAGAGGGCACTCGTTGGTGTTGGTGCTCGT 648
Query 181 GCCTTGTTTTATCCTACTCTGATTTACAACGTTGTTAGGAATAAGCTCGAGA-CTGAGTT 239
|| |||||||||||||||||| |||||||||||||||||||||||||||| | |||||||
Sbjct 649 GCTTTGTTTTATCCTACTCTGGTTTACAACGTTGTTAGGAATAAGCTCGA-ATCTGAGTT 707
Query 240 TCGCTGGTGGGATCGAGTTGCTGAGTTTATATTACTGGGAGCTGTTCCATTCCCATCTGA 299
||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 708 TCGCTGGTGGGATCGCGTGGCTGAGTTTATATTACTGGGAGCTGTTCCATTTCCATCTGA 767
Query 300 TGTTCCACAGCTGAAAGAGCTCGGTGTTTGTGGAGTGATCACTCTGAATGAGCCATATGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 TGTTCCACAGCTGAAAGAGCTCGGTGTTTGTGGAGTGATCACTCTGAATGAGCCATATGA 827
Query 360 AACTTTGGTTCCATCGTCTCTCTACAAATCTTACTGCATTGACCACCTGGTGATTGCCAC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 828 AACTTTGGTTCCATCGTCTCTCTACAAATCTTACTGCATTGACCACCTGGTGATTGCTAC 887
Query 420 AAGGGATTATTGTTTTGCTCCTTCCATGGAAGCAATATGCCAAGCTGTAGAATTTATCCA 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 AAGAGATTATTGTTTTGCTCCTTCCATGGAAGCAATATGCCAAGCTGTAGAATTTATCCA 947
Query 480 TAGAAATGCTTTGCTTGGAAAGACTACTTATGTTCACTGCAAAGCGGGTCGGGGTCGCAG 539
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 948 TAGAAATGCTTCGCTTGGAAAGACGACTTATGTTCACTGCAAAGCGGGTCGGGGTCGCAG 1007
Query 540 CACAACTATTGTCATTTGCTACTTGGTTCAACACAAAAACATGACACCTGAAGCAGCATA 599
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 CACAACTATTGTCATATGCTACTTGGTTCAACACAAAAACATGACACCTGAAGCAGCATA 1067
Query 600 TGCCTACGTGAGGTCAATCAGGCCCAGGGTTCTATTAGCAGCCGCCCAATGGAAGGCCGT 659
| |||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1068 TTCCTACGTGAGATCAATCAGGCCCAGGGTTCTTTTAGCAGCAGCCCAATGGAAGGCCGT 1127
Query 660 TGTTGAGTACTACCATGTCAAGGTGCTGAATACTAAGAGCTGCTTAACTGATACAACTTC 719
|||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||
Sbjct 1128 TGTTGAGTACTACCATGTCAAGGTGCTGAATACTCAGAGTTGCTTAACTGATGCAACTTC 1187
Query 720 AGCTTTGATCCCGAGAAACGTGAAGCAGGTTTGTTCTGGGAATGTAGTGGTGTTTGATGA 779
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 AGCTTTGATCCCGAGAAATGTGAAGCAGGTTTGTTCTGGGAATGTAGTGGTGTTTGATGA 1247
Query 780 TGGGTCAATGGTGGTAGTCACCCACTCGGATCTAGAGGGCTATAATGATGGTGACTCACG 839
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1248 TGGGTCAATGGTTGTAGTCACCCACTCGGATCTAGAGGGCTATAATGATGATGACTCACG 1307
Query 840 G--A-GG---TCAGTGAATGTTACTGGGAATGAGCTATGGGCGGCAGCTGCAGATCTGAG 893
| | || |||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1308 GTCACGGAGGTCAGTGAAAGTTAATGGGAATGAGCTATGGGCGGCAGCTGCAGATCTGAG 1367
Query 894 CATGGTGTACCGGGTGAAAGTGGTGGGGCAGGCTGCGATGGCGAGGATCTCGTGTCTGTG 953
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1368 CATGGTGTACAGGGTGAAAGTGGTGGGGCAGGCTGCGATGGCGAGGATATCGTGTCTGTG 1427
Query 954 GCTAGGCTTGCGTGAGGACCACAAGCTTTCTGGGAAAAATCTTTCCATGGGAGGCATAAG 1013
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1428 GCTGGGCTTGCGTGAGGACCAAAAGCTTTCTGGGAAAAATCTTTCCATGGGAGGCATAAG 1487
Query 1014 CGTCGACATTTCCGTCTACTGATGATGATGGCGAAGAATGAAT 1056
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1488 CGTCGACATTTCTGTCTACTGATGATGATGGCGAAGAATGAAT 1530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51791405557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5