BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934209
Length=601
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35830.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 682 0.0
AT2G35810.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 660 0.0
AT2G35820.1 | Symbols: | ureidoglycolate hydrolases | chr2:150... 499 1e-140
> AT2G35830.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT2G35810.1).
| chr2:15052199-15053275 FORWARD LENGTH=788
Length=788
Score = 682 bits (369), Expect = 0.0
Identities = 503/567 (89%), Gaps = 11/567 (2%)
Strand=Plus/Plus
Query 15 TTC-ACAATGGCGAAATCTCCGGTGGAAGTGAAACTGA-TCTCTATCGAAGCTACTCCGG 72
||| || |||||||||||||||||||||||||| ||| || ||||||||||||||||||
Sbjct 97 TTCAACGATGGCGAAATCTCCGGTGGAAGTGAATTTGATTC-CTATCGAAGCTACTCCGG 155
Query 73 AG-ACTTTCGCGGACTATGGTCAAATCATCGAAGCCTCCCGTGATGGTGCCT-CTTTTGG 130
|| || ||||| || ||||||||| |||| |||||||| |||||||||| || ||| ||
Sbjct 156 AGAAC-TTCGCAGAGTATGGTCAAGTCATTGAAGCCTCTCGTGATGGTG-CTGGTTTCGG 213
Query 131 TCCCGACGACGCTCAATTAGATCTCTCCAGAGGAACCCCACGGTTCTATATACTCCGGCT 190
|||| ||||||||||| |||||||||| ||||||||||||||| |||||||||| ||||
Sbjct 214 TCCCCACGACGCTCAACTAGATCTCTCTAGAGGAACCCCACGGCTCTATATACTTAGGCT 273
Query 191 GGAAGGAAGATCCTTAGGGTTTTCCAACATCACATATCACGCAAATGTGACACAGTGTCT 250
| ||| || | |||||||||||| ||| |||||| |||||||||| ||||||||||||||
Sbjct 274 GAAAGAAACACCCTTAGGGTTTTTCAAGATCACACATCACGCAAAGGTGACACAGTGTCT 333
Query 251 AGGATCAATAGGAGGTCATGTTTGGTATCTTGGAGTAGCTAAGCCGTCTCTTATTGAAGA 310
|||||||||||||||| ||||||||||| | ||||| |||||||||||||||||||||||
Sbjct 334 AGGATCAATAGGAGGTGATGTTTGGTATATGGGAGTGGCTAAGCCGTCTCTTATTGAAGA 393
Query 311 TGATGATGGTAATGGAAGGAGAGTAGATGCAGTAGAATCAAAGTCTGGCCACTTGTACAT 370
|||||| | | |||||||||| |||||| ||||| ||||||||||||| ||||| |||||
Sbjct 394 TGATGACGATGATGGAAGGAGCGTAGATACAGTAAAATCAAAGTCTGGTCACTTATACAT 453
Query 371 TCCTCCTGCAG-TGGAAGAGATTCGCGTCTTCAGGATCTCGGGACCCAAGTTTGTTAAAC 429
||| |||| || ||||||||||||||||||||||| |||||||||| |||||||| ||||
Sbjct 454 TCCACCTG-AGGTGGAAGAGATTCGCGTCTTCAGGTTCTCGGGACCAAAGTTTGTGAAAC 512
Query 430 T-CAACCGCGGTACATGGCATGCTGGACCCTTGTTTAGAGACAGCTCCTCCATGGATTTC 488
| || ||| ||||||||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct 513 TGCA-CCGTGGTACATGGCATGCTGGACCCTTGTTTAGTGGCAGCTCCTTCATGGATTTC 571
Query 489 TACAACTTAGAGCTCACCAACACAAATGAGGTGGATCACACGACGCATGATTTCAAGAAG 548
|||||||||||||||| ||||||||||| ||||||||||||| | |||||||||| |||
Sbjct 572 TACAACTTAGAGCTCAGCAACACAAATGTGGTGGATCACACGTCACATGATTTCACCAAG 631
Query 549 AATAATGGAGTCATCTACCGATTTGAC 575
||||||||||||| || | ||||||||
Sbjct 632 AATAATGGAGTCAGCTTCGGATTTGAC 658
> AT2G35810.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G35830.2);
Has 153 Blast hits to 153 proteins in 52 species: Archae -
0; Bacteria - 62; Metazoa - 0; Fungi - 0; Plants - 82; Viruses
- 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr2:15049150-15050323
FORWARD LENGTH=858
Length=858
Score = 660 bits (357), Expect = 0.0
Identities = 518/594 (87%), Gaps = 18/594 (3%)
Strand=Plus/Plus
Query 2 CATTTTCTTGTGGT-TC-A--C-A--ATGGCGAAATCTCCGGTGGAAGTGAAACTGAT-C 53
|||||||||||||| || | | | |||||||||||||||||||||||||| ||||| |
Sbjct 19 CATTTTCTTGTGGTGTCAAGTCAACGATGGCGAAATCTCCGGTGGAAGTGAATCTGATAC 78
Query 54 TCTATCGAAGCTACTCCGGAGACTTTCGCGGACTATGGTCAAATCATCGAAGCCTCCCGT 113
| ||||||||||| || ||||| ||||| || ||||||||| ||||||||||||| |||
Sbjct 79 -CAATCGAAGCTACACCTGAGACCTTCGCAGAGTATGGTCAAGTCATCGAAGCCTCTCGT 137
Query 114 GATGGTGCCTCTTTTGGTCCCGACGACGCTCAATTAGATCTCTCCAGAGGAACCCCACGG 173
||||| ||| || |||||| ||||||||||||| |||||||| | ||||| |||||||
Sbjct 138 GATGGGGCCGGTTACGGTCCCAACGACGCTCAATTGGATCTCTCTAAAGGAATCCCACGG 197
Query 174 TTCTATATACTCCGGCTGGAAGGAAGATCCTTAGGGTTTTCCAACATCACATATCACGCA 233
|||||||||| ||||| ||| || | |||||||||||| ||| ||||| ||||||||
Sbjct 198 CTCTATATACTTAGGCTGAAAGAAACACCCTTAGGGTTTTTCAAGATCACGCATCACGCA 257
Query 234 AATGTGACACAGTGTCTAGGATCAATAGGAGGTCATGTTTGGTATCTTGGAGTAGCTAAG 293
|| |||||||||||||||||||||||||||||| || |||||||| | ||||| ||||||
Sbjct 258 AAGGTGACACAGTGTCTAGGATCAATAGGAGGTGATATTTGGTATATGGGAGTGGCTAAG 317
Query 294 CCGTCTCTTATTGAAGATGATGATGGTAATGGAAGGAGAGTAGATGCAGTAGAATCAAAG 353
|| |||||||||||||||||||||| | |||||||||||||||| ||||| || |||||
Sbjct 318 CCATCTCTTATTGAAGATGATGATG--A-TGGAAGGAGAGTAGATACAGTAAAAGCAAAG 374
Query 354 TCTGGCCACTTGTACATTCCTCCTGCAG-TGGAAGAGATTCGCGTCTTCAGGATCTCGGG 412
||||| |||||||||||||| |||| || ||||||||||||||||||||||| |||||||
Sbjct 375 TCTGGTCACTTGTACATTCCACCTG-AGGTGGAAGAGATTCGCGTCTTCAGGTTCTCGGG 433
Query 413 ACCCAAGTTTGTTAAACT-CAACCGCGGTACATGGCATGCTGGACCCTTGTTTAGAGACA 471
||| |||||||| ||||| || ||| ||||||||||||||||||||||||||||| | ||
Sbjct 434 ACCAAAGTTTGTGAAACTGCA-CCGTGGTACATGGCATGCTGGACCCTTGTTTAGTGGCA 492
Query 472 GCTCC-TCCATGGATTTCTACAACTTAGAGCTCACCAACACAAATGAGGTGGATCACACG 530
||||| || |||||||||||||||||||| |||| ||||||||||| |||||||||||||
Sbjct 493 GCTCCATC-ATGGATTTCTACAACTTAGAACTCAGCAACACAAATGTGGTGGATCACACG 551
Query 531 ACGCATGATTTCAAGAAGAATAATGGAGTCATCTACCGATTTGACCCCTAAGAA 584
| |||||||||| ||||||||||||||||| || ||| |||||| ||||||||
Sbjct 552 TCACATGATTTCACGAAGAATAATGGAGTCAGCTTCCGCTTTGACACCTAAGAA 605
> AT2G35820.1 | Symbols: | ureidoglycolate hydrolases | chr2:15050912-15052239
FORWARD LENGTH=835
Length=835
Score = 499 bits (270), Expect = 1e-140
Identities = 489/591 (83%), Gaps = 29/591 (5%)
Strand=Plus/Plus
Query 21 ATGGCGAAATCTCCGGTGGAAGTGAAACTGATCTCTATCGAAGCTACTCCGGAGACTTTC 80
||||||||||| ||||| || |||||||||||| | |||||||||||||| |||| ||||
Sbjct 22 ATGGCGAAATCCCCGGTAGAGGTGAAACTGATCCCGATCGAAGCTACTCCTGAGAATTTC 81
Query 81 GCGGACTATGGTCAAATCATCGAAGCCTCCCGTGATGGTGCCTCTTTTGGTCCCGACGAC 140
|| |||||||||||| ||||||||||||| ||||| ||||| ||| |||||| |||||
Sbjct 82 GCAGACTATGGTCAAGTCATCGAAGCCTCTCGTGACGGTGCAGGTTTCGGTCCCAACGAC 141
Query 141 GCTCAATTAGATCTCTCCAGAGGAACCCCACGGTTCTATATACTCCGGCTGGAAG-GA-A 198
|||||| | |||||||||||||||| |||||||||||||||| | ||| | || || |
Sbjct 142 GCTCAACTGGATCTCTCCAGAGGAATCCCACGGTTCTATATAATGCGGAT--CAGAGATA 199
Query 199 GATCCTTAGGGTTTTCC-AACATCACAT-ATCACGCAAATGTGACACAGTGTCTAGGATC 256
| |||| | |||||| || |||| | | ||||| | ||||||||||||||||||||
Sbjct 200 CACCCTTTGACTTTTCCGTAC-TCAC-TCACCACGCGAGCGTGACACAGTGTCTAGGATC 257
Query 257 AATAGGAGGTCATGTTTGGTATCTTGGAGTAGCTAAGCCGTCTCTTATTGAAGATGATGA 316
||||||||||||||||||||| |||||||| ||||| ||| | ||||||||||||| |||
Sbjct 258 AATAGGAGGTCATGTTTGGTACCTTGGAGTGGCTAAACCGACACTTATTGAAGATGGTGA 317
Query 317 TGGTAATGGAAGGA-GAGTAGATGCAGTAGAA-TCAAAGTCTGGCCACTTGTACATTCCT 374
|| | ||||| || | |||||| | | ||| |||| |||||| ||||||||| ||||
Sbjct 318 TG--A-TGGAAAGATG-GTAGATAAATT-GAAATCAAGGTCTGGTCACTTGTACGCTCCT 372
Query 375 CCTGCAGTGGAAGAGATTCGCGTCTTCAGGATCTCGGGACCCAAGTTTGTTAAACTCAAC 434
||||| || ||||||||||||||||||||| |||||||||| |||||| ||||||| |||
Sbjct 373 CCTGCGGTTGAAGAGATTCGCGTCTTCAGGGTCTCGGGACCAAAGTTTATTAAACTGAAC 432
Query 435 CGCGGTACATGGCATGCTGGACC-CTTGTTTAGAGACAGCTCCTCCATGGATTTCTACAA 493
| |||||| ||||||| |||||| || || || ||||||| | ||||| ||||||||
Sbjct 433 CACGGTACGTGGCATGTTGGACCACTC-TTCAGTGACAGCTAC---ATGGACTTCTACAA 488
Query 494 C-TTAGAGCTCACCAACACAAATGAGGTGGATCACACGACGCATGATTTCAAGAAGAATA 552
| || ||||||| ||||||||||| |||||||| |||||| ||||||||| || ||||
Sbjct 489 CCTT-GAGCTCAGCAACACAAATGCGGTGGATCGCACGACATATGATTTCATCAAAAATA 547
Query 553 ATGGAGTCATC-TACCGATTTGACCCCTAA-GAATAAGATGACACATCGTC 601
| ||||||| | | |||| |||||||| || || | | ||||||||||||
Sbjct 548 AAGGAGTCACCAT-CCGAGTTGACCCC-AACGA-T--GTTGACACATCGTC 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28934868672
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5