BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934274
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36430.1 | Symbols: | Plant protein of unknown function (DU... 2113 0.0
> AT2G36430.1 | Symbols: | Plant protein of unknown function (DUF247)
| chr2:15290204-15291763 FORWARD LENGTH=1560
Length=1560
Score = 2113 bits (1144), Expect = 0.0
Identities = 1307/1385 (94%), Gaps = 13/1385 (1%)
Strand=Plus/Plus
Query 14 AATCAAAATGGTGGATGCGGCGGAGCAACCGCCTTCTGCCTCCGTATCCGACGAGGGAGA 73
|||||||||||||||||||||||||||||| |||||| || | | |||||||||
Sbjct 1 AATCAAAATGGTGGATGCGGCGGAGCAACCACCTTCT---ACC---T-C--CGAGGGAGA 51
Query 74 AAGCCTCTTCAAGATCCGCATTGAGAGAATGCATGAGAAGCTGAAGGAGCCACCGCGGTT 133
||||||| ||||||||| ||||||||| |||||| ||||||||||||| ||||| |||||
Sbjct 52 AAGCCTCCTCAAGATCCACATTGAGAGGATGCATAAGAAGCTGAAGGAACCACCACGGTT 111
Query 134 ACTTAGCTCGGCTGCCGGAAAACCAACTTGCTCCATCTTCCGAGTACCTCAGAGCATGAT 193
|| || ||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 112 GCTCAGTTCGGCCGCCGGGAAACCTACTTGCTCCATCTTCCGGGTACCTCAGAGCATGAT 171
Query 194 TGATTGTAACGGTAGATGGTATGAGCCGCGAGTGGTCTCGGTTGGACCGTTCCACCGTGG 253
||||||||| || ||||| |||||||| |||||||||||| ||||||||| |||||||||
Sbjct 172 TGATTGTAATGGAAGATGCTATGAGCCACGAGTGGTCTCGATTGGACCGTACCACCGTGG 231
Query 254 CCAAACACGCCTCGAAATGATTCAAGAACACAAATGGCGTTACCTAAACGTTCTTCTCAC 313
|||||||| ||| |||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 232 CCAAACACAACTCAAAATGATTGAAGAACACAAATGGCGTTACCTAAACGTTCTGCTCAC 291
Query 314 GAGAACCCAAAACCTAACTCTAGAGGATTACATGAAGAGCGTGAAGAGCGTTGAGGAAGA 373
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 292 TAGAACCCAAAACCTAACTCTAGAGGATTACATGAAGAGCGTGAAGAACGTTGAGGAAGT 351
Query 374 GGCGAGAGAGTGTTACTCCGAGACAATCCATATGGACTCGGAAGAGTTCAACGAGATGAT 433
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 352 GGCGAGAGAATGTTACTCCGAGACAATCCACATGGACTCGGAAGAGTTCAACGAGATGAT 411
Query 434 GGTTCTTGACGGTTGCTTTCTTCTTGAGCTGTTTCGCAAAGTGAACAATCTTGTTCCTTT 493
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 412 GGTTCTTGACGGTTGCTTTCTCCTTGAGCTGTTTCGCAAAGTGAACAATCTTGTTCCTTT 471
Query 494 CGAACCAAACGATCCACTTGTAGCCATGGCTTGGGTTCTTCCTTTCTTCTACAGAGATTT 553
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 472 CGAACCAAACGATCCACTTGTGGCCATGGCTTGGGTTCTTCCTTTCTTCTACAGAGATTT 531
Query 554 TCTCTGTCTTGAGAATCAAATCCCTTTCTTCGTTCTTGAAACTTTGTTCGATCTCACAAG 613
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 532 TCTCTGTCTTGAGAATCAAATCCCTTTCTTCGTTCTAGAAACTTTGTTCAATCTCACAAG 591
Query 614 AGGAGATAACAAAAACGAGACCAACGCTTCTTTACCGTCTCTAGCGTTTGCGTTCTTCAA 673
|||||| ||| |||||||||| ||||||||||||| ||||||||||||||||| |||||
Sbjct 592 AGGAGACAACGAAAACGAGACAAACGCTTCTTTACAATCTCTAGCGTTTGCGTTTTTCAA 651
Query 674 CAACATGATGCACAGAACAGACGAAGATCTCGCCAGGTTCAAAGAGCTAAGAGCAAAACA 733
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 652 CAACATGATGCACAGAACAGAGGAAGATCTCGCCAGGTTCAAAGAGCTAAGAGCCAAACA 711
Query 734 CCTCCTCGACCTCCTCCGGTCAAGTTTCATCCCGGAGAGTCAGCTTCACACGCCGCCGGA 793
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 712 CCTCCTCGACCTCCTCCGGTCAAGTTTCATCCCGGAGAGTGAGCTTCACACGCCGCCGGC 771
Query 794 AACGAATCCAGGGAAGGAGAAGATGCCGTCCCACATCATCCACAGCATCTCGAAGCTCCG 853
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 772 AACGAATCCAGGGAAGGAAAAGATGCCGTCCCACATTATCCACAGCATTTCGAAGCTCCG 831
Query 854 GCGAGCAGGGATCAAACTCCGGGAGCTAAAAGACGCAGAGAGCTTCTTAGTGGTGAGATT 913
|||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 832 GCGAGCCGGGATCAAACTCCGAGAGCTGAAAGACGCAGAGAGCTTCTTAGTGGTGAGATT 891
Query 914 CAGACAC-GGAGCGATCGAGATGCCGGCGATCACCGTCGACGATTTCATGAGCAGTTTCT 972
||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 CAGACACGGGA-CCATCGAGATGCCGGCGATCACCGTCGACGATTTCATGAGCAGTTTCT 950
Query 973 TAGAGAACTGCGTGGCCTATGAGCAGTGCCACGTGGCGTGCTCAATGCATTTCACGACAT 1032
|||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 951 TAGAGAACTGCGTGGCATACGAGCAATGCCACGTGGCGTGCTCAATGCATTTCACGACAT 1010
Query 1033 ACGCGACGCTCCTAGATTGTCTGACGAACACTTACAAGGACGTTGAGTATCTATGCGACC 1092
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1011 ACGCGACGCTCCTAGATTGTCTGACGAATACTTACAAGGACGTTGAGTATCTATGCGACC 1070
Query 1093 AAAACATCATAGAAAACTATTTCGCAACAGACACAGAGCTTGCGAGATTCGTGAACAGTC 1152
|||||||||||||||||||||||| |||||| |||||||| |||| |||||||||||||
Sbjct 1071 AAAACATCATAGAAAACTATTTCGGAACAGATACAGAGCTGGCGAAATTCGTGAACAGTT 1130
Query 1153 TAGGCAGAGATGTGGCGTTCGACATAACACAGTGTTATCTCAAAGACTTGTTTGAAGAAG 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TAGGCAGAGATGTGGCGTTCGACATAACACAGTGTTATCTCAAAGACTTGTTTGAAGAAG 1190
Query 1213 TGAATGAGTATTACAAGAGTAGTTGGCACGTGGAATGGGCTACTTTCAAATTCACTTACT 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TGAATGAGTATTACAAGAGTAGTTGGCACGTGGAATGGGCTACTTTCAAATTCACTTACT 1250
Query 1273 TTAACTCTCCGTGGTCTTTTGTCTCTGCTCTTGCTGCTCTTGTTCTTTTGGTCTTGTCCG 1332
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 TTAACTCTCCTTGGTCTTTTGTCTCTGCTCTTGCTGCTCTTGTTCTTTTGGTCTTGTCCG 1310
Query 1333 TTATCCAAACTGTTTACACTGTTTTCCAGGCTTATCAAAAATAAAATT--CAACCTTTTC 1390
||||||| ||| ||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1311 TTATCCAGACTATTTACACTGTTTTCCAGGCTTATCAAAAATAAATTTTTCAACCTTTTC 1370
Query 1391 ATTAT 1395
|||||
Sbjct 1371 ATTAT 1375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68875147740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5