BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934293
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36630.1 | Symbols: | Sulfite exporter TauE/SafE family pro... 2202 0.0
> AT2G36630.1 | Symbols: | Sulfite exporter TauE/SafE family protein
| chr2:15352491-15355177 REVERSE LENGTH=1783
Length=1783
Score = 2202 bits (1192), Expect = 0.0
Identities = 1354/1431 (95%), Gaps = 15/1431 (1%)
Strand=Plus/Plus
Query 1 TTAGGGTTTTAT-TTAGAAGAATGGGATTGTGGAATGGAAAAGGTACCGGAGGATTTATC 59
|||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 107 TTAGGGTTTTGTATTAGAAGAATGGGATTGTGGAATGGAAAAGGCACCGGAGGATTTATC 166
Query 60 CTCTACCTTCTCGTGGGTTTCTCCGTCGCCGTCTTCTCTGTTTCTTACGTCGGAGACACA 119
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 CTCTACCTTCTCGTGGCTTTCTCCGTCGCCGTCTTCTCTGTTTCTTACGTCGGAGACACA 226
Query 120 ACAAACCCTAATCATCATCATCAtctctcttcctcctctcctctctctGCCACCGAAAAA 179
||||||||| || ||||||||| || | || || | ||||||||||||||||||||
Sbjct 227 ACAAACCCT-AT--TCATCATCA----TC-T-CT-CT-T-CTCTCTCTGCCACCGAAAAA 274
Query 180 ATTTGGCCGGATTTGAAGTTTAGCTGGAAACTTGTGTTGGCTACAGTGATAGCGTTTCTA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 ATTTGGCCGGATTTGAAGTTTAGCTGGAAACTTGTGTTGGCTACAGTGATAGCGTTTCTA 334
Query 240 GGATCAGCTTGTGGGACTGTTGGTGGTGTTGGAGGCGGTGGGATTTTTGTTCCTATGCTC 299
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 335 GGATCAGCTTGTGGGACTGTTGGTGGTGTTGGAGGTGGTGGGATTTTTGTTCCTATGCTC 394
Query 300 ACTCTCATTCTCGGGTTTGATACAAAATCCGCAGCAGCAATATCAAAATGTATGATAATG 359
||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 395 ACTCTTATACTCGGGTTCGATACAAAATCCGCAGCTGCAATATCAAAATGTATGATAATG 454
Query 360 GGAGCATCAGCATCATCAGTTTGGTACAATGTAAGAGTTCGTCATCCGACAAAAGAAGTA 419
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 455 GGAGCATCAGCATCATCAGTTTGGTACAATGTACGAGTTCGTCATCCGACAAAAGAAGTA 514
Query 420 CCAATCTTAGACTATGATCTTGCTCTTCTTTTTCAACCAATGCTTCTTCTCGGTATCACT 479
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 515 CCAATCTTAGATTATGATCTTGCTCTTCTCTTTCAACCAATGCTTCTTCTCGGTATCACT 574
Query 480 GTTGGTGTTTCTCTCAGTGTTGTTTTCCCTTACTGGCTCATCACTGTCCTCATCATCATT 539
||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 575 GTTGGTGTTTCTCTCAGTGTTGTGTTCCCTTATTGGCTCATTACTGTCCTCATCATCATT 634
Query 540 CTTTTCGTTGGTACTTCTTCGAGATCTTTCTTTAAAGGCATTGAGATGTGGAAGGAAGAG 599
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 635 CTTTTCGTCGGTACTTCTTCGAGATCTTTTTTTAAAGGCATTGAGATGTGGAAGGAAGAG 694
Query 600 ACATTGTTAAAGAACGAAATGGCGCAGCAACGAGCTAATATGGTTAATTCCCGGGGAGAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 ACATTGTTAAAGAACGAAATGGCGCAGCAACGAGCTAATATGGTTAATTCCCGGGGAGAA 754
Query 660 CTTTTAATCGACACAGAGTATGAGCCGCTTTACCCGAGAGAAGAGAAATCAGAGCTGGAA 719
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 755 CTTTTAATCGATACAGAGTATGAGCCGCTTTACCCGAGAGAAGAAAAATCAGAGCTGGAA 814
Query 720 ATAATACGCTCCAACCTCAAATGGAAACGGCTTCTAGTTCTGGTAACTGTGTGGTTTG-C 778
||||||||||||||||||||||||||| |||||||| |||| |||||||||||||| | |
Sbjct 815 ATAATACGCTCCAACCTCAAATGGAAAGGGCTTCTAATTCTAGTAACTGTGTGGTT-GAC 873
Query 779 TTTCTTGCTCATCCAAATTATCAAGAACGAAATAAAGGTCTGCAGCACAATATATTGGAT 838
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 874 TTTCTTGCTCATTCAAATTGTCAAGAACGAAATAAAGGTCTGCAGCACAATATATTGGAT 933
Query 839 ACTATTCGTCTTACAGTTCCCAGTTGCTTTAGCGGTGTTTGGATTTGAAGCGATAAAATT 898
||||||| || ||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 934 ACTATTCATCGTACAGTTCCCAGTTGCTTTAGCGGTGTTTGGGTTTGAAGCAAGCAAATT 993
Query 899 GTACACAGAGAACAAAAAGAGGCTAAGCAGTGGAAACACTGAATGTATCTGTGAAGCTAC 958
||| |||| ||||||||||||| ||| |||||| ||||||||||||||||||||||||||
Sbjct 994 GTATACAGCGAACAAAAAGAGGTTAAACAGTGGCAACACTGAATGTATCTGTGAAGCTAC 1053
Query 959 GATCGAGTGGACTCCTCTGAGTCTAATATTCTGTGGTCTCTGTGGTGTCGTTGGAGGCAT 1018
||| ||||||||||||||||||||||| |||||||||||||||||| || ||||||| ||
Sbjct 1054 GATTGAGTGGACTCCTCTGAGTCTAATCTTCTGTGGTCTCTGTGGTCTCATTGGAGGTAT 1113
Query 1019 CGTAGGTGGTCTCCTCGGATCCGGTGGTGGATTTGTTCTCGGTCCTTTGCTTCTTGAAAT 1078
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1114 CGTAGGTGGTCTCCTTGGATCCGGTGGTGGATTTGTTCTCGGGCCTTTGCTTCTTGAGAT 1173
Query 1079 TGGAGTCATCCCACAGGTTGCTAGCGCGACAGCTACCTTTGTGATGATGTTTTCTTCGTC 1138
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1174 TGGAGTCATCCCACAGGTTGCTAGCGCAACAGCTACCTTTGTGATGATGTTTTCTTCGTC 1233
Query 1139 TTTATCCGTAGTCGAGTTCTATCTCCTCAAAAGATTCCCAATCCCATACGCAATGTATTT 1198
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 1234 CTTATCCGTAGTCGAGTTCTATCTCCTCAAGAGATTCCCAATACCATACGCAATGTACTT 1293
Query 1199 GATTTCGGTATCAATTCTTGCCGGTTTTTGGGGACAATCCTTTATCAGAAAACTTGTGGC 1258
|||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1294 GATTTCGGTATCGATTCTTGCCGGTTTTTGGGGACAATCCTTTATAAGAAAGCTCGTGGC 1353
Query 1259 CATTCTGAAAAGAGCTTCCATCATCGTTTTCGTTCTCTCAGGAGTCATTTGTGCCAGTGC 1318
|| |||| |||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1354 GATCCTGAGAAGAGCTTCCATAATCGTTTTCGTTCTCTCAGGAGTCATTTGTGCAAGTGC 1413
Query 1319 TCTCACAATGGGAGTAATAGGGATAGAGAAGAGCATAAAGATGATACATAACCATGAATT 1378
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 TCTCACAATGGGAGTGATTGGGATAGAGAAGAGCATAAAGATGATACATAACCATGAATT 1473
Query 1379 CATGGGATTCTTGGGATTCTGCAGCAGTCAATGAATCTTCAATCTATCTGA 1429
|||||||||||| |||||||||||||||||||||||| | ||||||||||
Sbjct 1474 CATGGGATTCTTAGGATTCTGCAGCAGTCAATGAATCAACCATCTATCTGA 1524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581966270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5