BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934366
Length=826
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37180.1 | Symbols: RD28, PIP2;3, PIP2C | Aquaporin-like sup... 867 0.0
AT2G37170.1 | Symbols: PIP2B, PIP2;2 | plasma membrane intrinsi... 846 0.0
AT3G53420.1 | Symbols: PIP2A, PIP2, PIP2;1 | plasma membrane in... 568 4e-161
> AT2G37180.1 | Symbols: RD28, PIP2;3, PIP2C | Aquaporin-like superfamily
protein | chr2:15617708-15619155 FORWARD LENGTH=1147
Length=1147
Score = 867 bits (469), Expect = 0.0
Identities = 541/577 (94%), Gaps = 0/577 (0%)
Strand=Plus/Plus
Query 250 GTGGTCACATAAACCCGGCGGTGACATTGGGATTGTTCTTGGCTCGGAAGGTGTCGCTGA 309
|||||||||||||||| |||||||| || || |||||||| || |||||||| |||||||
Sbjct 373 GTGGTCACATAAACCCTGCGGTGACGTTTGGTTTGTTCTTAGCCCGGAAGGTATCGCTGA 432
Query 310 TTAGGGCGGTGCTTTACATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGTTTG 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 TTAGGGCGGTGCTTTACATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGTTTG 492
Query 370 TGAAGGCTTTTCAAAGCTCTTACTACGTTCGTTACGGTGGAGGAGCCAACTCTCTAGCCG 429
||||||| |||||||||||| |||| ||| |||||||||||||||||||| |||||| |
Sbjct 493 TGAAGGCATTTCAAAGCTCTCACTATGTTAATTACGGTGGAGGAGCCAACTTTCTAGCTG 552
Query 430 ACGGTTACAACACAGGCACGGGACTTGCCGCAGAGATCATCGGAACATTCGTGCTCGTCT 489
|||| ||||| |||||||| ||||| || |||||||||||||||||||||||||| ||||
Sbjct 553 ACGGCTACAATACAGGCACCGGACTCGCGGCAGAGATCATCGGAACATTCGTGCTTGTCT 612
Query 490 ACACAGTCTTCTCCGCCACTGATCCCAAACGCAACGCTAGAGACTCCCACGTTCCGGTGT 549
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 613 ACACAGTCTTCTCCGCTACTGATCCCAAACGCAACGCTAGAGACTCCCACGTTCCGGTTT 672
Query 550 TGGCGCCACTTCCGATTGGGTTTGCGGTGTTTATGGTACATTTGGCCACTATTCCGATCA 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 TGGCGCCACTTCCGATTGGGTTTGCGGTGTTTATGGTACATTTGGCCACTATTCCGATCA 732
Query 610 CCGGAACCGGTATCAACCCGGCCAGGAGTTTCGGAGCCGCCGTAATCTTTAACAAGAGCA 669
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 733 CCGGAACCGGTATCAACCCGGCTAGGAGTTTCGGAGCCGCCGTAATCTTTAACAAGAGCA 792
Query 670 AGCCATGGGATGACCACTGGATATTCTGGGTAGGACCATTCATTGGAGCTGCGATAGCTG 729
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 793 AGCCATGGGATGACCACTGGATATTCTGGGTGGGACCATTCATTGGAGCTACGATAGCTG 852
Query 730 CATTTTATCACCAATTTGTCCTCAGGGCCTCAGGTTCCAAGTCACTCGGTTCCTTCAGAA 789
|||||||||||||||| || || ||||||||||| |||||||| |||||||| |||||||
Sbjct 853 CATTTTATCACCAATTCGTTCTAAGGGCCTCAGGCTCCAAGTCCCTCGGTTCATTCAGAA 912
Query 790 GTGCAGCAAACGTTTGAACTTAGCCATAAAACAAAAA 826
||||||| ||||||| |||||||||| ||| |||||
Sbjct 913 GTGCAGCCAACGTTTAAACTTAGCCACGAAAGAAAAA 949
Score = 315 bits (170), Expect = 6e-85
Identities = 192/203 (95%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 1 AGAAACATCCATTAACACATATGGCGAAAGACGTGGAAGGACCTGAGGGATTTCAGACGA 60
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 52 AGAAACATCCATTAACACATATGGCTAAAGACGTGGAAGGACCTGATGGATTTCAGACGA 111
Query 61 GGGACTACGAAGATCCTCCGCCTACTCCGTTTTTCGACGCGGAGGAGCTTACCAAGTGGT 120
| || ||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 112 GAGATTACGAAGATCCTCCGCCAACACCGTTTTTCGACGCAGAGGAGCTTACCAAGTGGT 171
Query 121 CTTTGTACAGAGCAGTCATCGCCGAGTTCGTAGCTACTCTCCTCTTCTTATACGTCACCG 180
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 172 CTTTATACAGAGCAGTCATCGCCGAGTTCGTAGCCACTCTCCTCTTCTTGTACGTCACCG 231
Query 181 TTTTAACTGTCATCGGTTACAAG 203
||||||||||||| |||||||||
Sbjct 232 TTTTAACTGTCATTGGTTACAAG 254
> AT2G37170.1 | Symbols: PIP2B, PIP2;2 | plasma membrane intrinsic
protein 2 | chr2:15613402-15614857 REVERSE LENGTH=1146
Length=1146
Score = 846 bits (458), Expect = 0.0
Identities = 525/558 (94%), Gaps = 2/558 (0%)
Strand=Plus/Plus
Query 250 GTGGTCACATAAACCCGGCGGTGACATTGGGATTGTTCTTGGCTCGGAAGGTGTCGCTGA 309
|||||||||||||||| |||||||| || || |||||||| || |||||||| |||||||
Sbjct 368 GTGGTCACATAAACCCTGCGGTGACGTTTGGTTTGTTCTTAGCCCGGAAGGTATCGCTGA 427
Query 310 TTAGGGCGGTGCTTTACATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGTTT- 368
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 428 TTAGGGCGGTGCTTTACATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTT-GGTTTC 486
Query 369 GTGAAGGCTTTTCAAAGCTCTTACTACGTTCGTTACGGTGGAGGAGCCAACTCTCTAGCC 428
|| || || ||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 487 GTCAAAGCCTTTCAAAGCTCTTACTATGATCGTTACGGTGGAGGAGCCAACTCTCTAGCA 546
Query 429 GACGGTTACAACACAGGCACGGGACTTGCCGCAGAGATCATCGGAACATTCGTGCTCGTC 488
||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||
Sbjct 547 GACGGCTACAACACAGGCACCGGACTAGCCGCAGAGATCATTGGAACATTCGTTCTCGTC 606
Query 489 TACACAGTCTTCTCCGCCACTGATCCCAAACGCAACGCTAGAGACTCCCACGTTCCGGTG 548
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 607 TACACAGTCTTCTCCGCTACTGATCCCAAACGTAACGCTAGAGACTCCCACGTTCCGGTT 666
Query 549 TTGGCGCCACTTCCGATTGGGTTTGCGGTGTTTATGGTACATTTGGCCACTATTCCGATC 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TTGGCGCCACTTCCGATTGGGTTTGCGGTGTTTATGGTACATTTGGCCACTATTCCGATC 726
Query 609 ACCGGAACCGGTATCAACCCGGCCAGGAGTTTCGGAGCCGCCGTAATCTTTAACAAGAGC 668
||||||||||| ||||||||||| |||||||||||||| |||||||||| ||||||||||
Sbjct 727 ACCGGAACCGGCATCAACCCGGCTAGGAGTTTCGGAGCTGCCGTAATCTATAACAAGAGC 786
Query 669 AAGCCATGGGATGACCACTGGATATTCTGGGTAGGACCATTCATTGGAGCTGCGATAGCT 728
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 787 AAGCCATGGGATGACCACTGGATATTCTGGGTGGGACCATTCATTGGAGCTGCGATAGCT 846
Query 729 GCATTTTATCACCAATTTGTCCTCAGGGCCTCAGGTTCCAAGTCACTCGGTTCCTTCAGA 788
||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||
Sbjct 847 GCATTTTATCACCAATTTGTCCTAAGGGCTTCAGGTTCCAAGTCACTTGGATCCTTCAGA 906
Query 789 AGTGCAGCAAACGTTTGA 806
|||||||| |||||||||
Sbjct 907 AGTGCAGCCAACGTTTGA 924
Score = 261 bits (141), Expect = 8e-69
Identities = 169/183 (92%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 21 ATGGCGAAAGACGTGGAAGGACCTGAGGGATTTCAGACGAGGGACTACGAAGATCCTCCG 80
||||| |||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 67 ATGGCCAAAGACGTGGAAGGACCTGAGGGATTTCAGACAAGAGACTACGAAGATCCGCCA 126
Query 81 CCTACTCCGTTTTTCGACGCGGAGGAGCTTACCAAGTGGTCTTTGTACAGAGCAGTCATC 140
|| |||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||
Sbjct 127 CCAACTCCGTTTTTCGATGCGGACGAGCTTACCAAGTGGTCTTTATACAGAGCCGTCATT 186
Query 141 GCCGAGTTCGTAGCTACTCTCCTCTTCTTATACGTCACCGTTTTAACTGTCATCGGTTAC 200
|||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 187 GCCGAGTTCGTAGCCACTCTCCTCTTCTTGTACATCACCGTTTTAACTGTCATCGGTTAC 246
Query 201 AAG 203
|||
Sbjct 247 AAG 249
> AT3G53420.1 | Symbols: PIP2A, PIP2, PIP2;1 | plasma membrane
intrinsic protein 2A | chr3:19803655-19805713 REVERSE LENGTH=1374
Length=1374
Score = 568 bits (307), Expect = 4e-161
Identities = 474/556 (85%), Gaps = 6/556 (1%)
Strand=Plus/Plus
Query 250 GTGGTCACATAAACCCGGCGGTGACA-TTGGGATTGTTCTTGGCTCGGAAGGTGTCGCTG 308
|||||||||| ||||| ||||||||| ||||| | |||||||| || || |||||| |
Sbjct 567 GTGGTCACATTAACCCAGCGGTGACATTTGGG-CTATTCTTGGCACGTAAAGTGTCG-TT 624
Query 309 A-TTAGGGCGGTGCTT-TACATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGT 366
| |||||| | || ||||| | ||||||||||||||||| |||||||||||||| |
Sbjct 625 ACCTAGGGCCCT-ATTGTACATAATCGCTCAGTGTTTGGGTGCGATTTGTGGAGTTGGTT 683
Query 367 TTGTGAAGGCTTTTCAAAGCTCTTACTACGTTCGTTACGGTGGAGGAGCCAACTCTCTAG 426
|||| || || || ||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 684 TTGTCAAAGCCTTCCAAAGCTCTTACTACACCCGTTACGGAGGTGGAGCCAACTCTCTAG 743
Query 427 CCGACGGTTACAACACAGGCACGGGACTTGCCGCAGAGATCATCGGAACATTCGTGCTCG 486
|||| || |||| |||||| || || || |||||||||||||| || || ||||| || |
Sbjct 744 CCGATGGCTACAGCACAGGGACCGGTCTAGCCGCAGAGATCATTGGTACTTTCGTTCTTG 803
Query 487 TCTACACAGTCTTCTCCGCCACTGATCCCAAACGCAACGCTAGAGACTCCCACGTTCCGG 546
||||||| |||||||| |||||||| |||||||| | || |||||||||||||||||||
Sbjct 804 TCTACACCGTCTTCTCTGCCACTGACCCCAAACGTAGTGCCAGAGACTCCCACGTTCCGG 863
Query 547 TGTTGGCGCCACTTCCGATTGGGTTTGCGGTGTTTATGGTACATTTGGCCACTATTCCGA 606
|||||||||||||||| || || ||||| ||||| |||||||||||||| || ||||| |
Sbjct 864 TGTTGGCGCCACTTCCAATCGGATTTGCCGTGTTCATGGTACATTTGGCTACCATTCCCA 923
Query 607 TCACCGGAACCGGTATCAACCCGGCCAGGAGTTTCGGAGCCGCCGTAATCTTTAACAAGA 666
| ||||||||||| || |||||||| |||||||||||||| |||||||||| |||||||
Sbjct 924 TTACCGGAACCGGAATTAACCCGGCAAGGAGTTTCGGAGCTGCCGTAATCTACAACAAGA 983
Query 667 GCAAGCCATGGGATGACCACTGGATATTCTGGGTAGGACCATTCATTGGAGCTGCGATAG 726
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 984 GCAAGCCATGGGATGACCACTGGATATTTTGGGTTGGACCATTCATTGGAGCTGCGATAG 1043
Query 727 CTGCATTTTATCACCAATTTGTCCTCAGGGCCTCAGGTTCCAAGTCACTCGGTTCCTTCA 786
||||||| || |||||||| || || || || |||||||| ||||| || || || ||||
Sbjct 1044 CTGCATTCTACCACCAATTCGTTCTGAGAGCTTCAGGTTCTAAGTCTCTTGGATCATTCA 1103
Query 787 GAAGTGCAGCAAACGT 802
||||||| || |||||
Sbjct 1104 GAAGTGCTGCCAACGT 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40237551747
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5