BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934404
Length=538
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37478.1 | Symbols: CPuORF52 | conserved peptide upstream op... 283 1e-75
AT2G37480.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 283 1e-75
> AT2G37478.1 | Symbols: CPuORF52 | conserved peptide upstream
open reading frame 52 | chr2:15737842-15739848 FORWARD LENGTH=1455
Length=1455
Score = 283 bits (153), Expect = 1e-75
Identities = 169/176 (96%), Gaps = 3/176 (2%)
Strand=Plus/Plus
Query 366 GGTTTCGAAGAGCATAAGATAAGAATGCCTTCGGTGCCCTCTAAGCTTC-T--TCTCCTT 422
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 274 GGTTTCGAAGAGCATAAGATAAGAATGCCTTCGGTGCCCTCTAAGCTTCTTCCTCTCCTG 333
Query 423 TCTTTGATTCCTTCGTTGACTCCGTATCATTCTGGTTTGAGTTCTAATCGTTTGAAACCT 482
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 334 TCTTTGATTCCTTCGTTGACTCCTTATCATTCTGGTTTGAGTTCTAATCGTTTGAAACCT 393
Query 483 CTTGAAAAGTGTGATTGGCGTGGTAATCTTAGTTAACATTTCGTTTCCTTCTCCTC 538
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 394 CTTGAAAAGTGTGATTGGCGTGGTAATCTTAGTTAACATTTCCTTTCCTTCTTCTC 449
> AT2G37480.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G53670.2);
Has 186 Blast hits to 186 proteins in 35 species: Archae -
0; Bacteria - 2; Metazoa - 14; Fungi - 7; Plants - 154; Viruses
- 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr2:15737842-15739848
FORWARD LENGTH=1455
Length=1455
Score = 283 bits (153), Expect = 1e-75
Identities = 169/176 (96%), Gaps = 3/176 (2%)
Strand=Plus/Plus
Query 366 GGTTTCGAAGAGCATAAGATAAGAATGCCTTCGGTGCCCTCTAAGCTTC-T--TCTCCTT 422
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 274 GGTTTCGAAGAGCATAAGATAAGAATGCCTTCGGTGCCCTCTAAGCTTCTTCCTCTCCTG 333
Query 423 TCTTTGATTCCTTCGTTGACTCCGTATCATTCTGGTTTGAGTTCTAATCGTTTGAAACCT 482
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 334 TCTTTGATTCCTTCGTTGACTCCTTATCATTCTGGTTTGAGTTCTAATCGTTTGAAACCT 393
Query 483 CTTGAAAAGTGTGATTGGCGTGGTAATCTTAGTTAACATTTCGTTTCCTTCTCCTC 538
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 394 CTTGAAAAGTGTGATTGGCGTGGTAATCTTAGTTAACATTTCCTTTCCTTCTTCTC 449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25770117411
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5